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10nm

CRYO-EM STRUCTURE OF THE A149T DIMER VARIANT OF SERINE HYDROXYMETHYLTRANSFERASE 8 FROM SOYBEAN CULTIVAR ESSEX IN COMPLEX WITH PLP

Method: ELECTRON MICROSCOPY Dmax: 93.7 Å Quality: GOOD

SAXS Profile

SAXS profile for 10nm

P(r) Distribution

P(r) distribution for 10nm
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1. Structure Basics

entry_id10nm
deposition_date2026-01-28
titleCRYO-EM STRUCTURE OF THE A149T DIMER VARIANT OF SERINE HYDROXYMETHYLTRANSFERASE 8 FROM SOYBEAN CULTIVAR ESSEX IN COMPLEX WITH PLP
keywordsenzyme, missense variant, TRANSFERASE; TRANSFERASE
methodELECTRON MICROSCOPY
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Download Data

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2. SAXS Parameters (CRYSOL)

rg_guinier29.31 Å
rg_electron28.53 Å
i0132826000.00
molecular_weight91242.0 kDa
excluded_volume114100 ų
envelope_volume143560 ų
shell_volume41022 ų
envelope_diameter98.0 Å
shell_rg36.84 Å
envelope_rg28.48 Å
shape_rg28.54 Å
total_rg29.27 Å
total_atoms6440
n_residues895
n_harmonics20
q_range— – 0.5000 Å−1
n_points101
shell_typedirectional
solvent_density0.3340 e/ų
contrast_shell0.0300 e/ų
crysol_version4.1.3
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3. P(r) Analysis (GNOM)

dmax93.7 Å
rg_real29.22 Å
rg_real_error0.47 Å
i0_real1.3280e+08
i0_real_error2.0540e+06
rg_reciprocal29.26 Å
i0_reciprocal132800000.0000
total_estimate0.8977
solution_quality GOOD a GOOD solution
n_peaks2
r_peak_primary34.7 Å
skewness0.263
kurtosis-0.418
angular_range— – 0.2700 Å−1
current_alpha0.0001
highest_alpha58630000.0000
n_real_points55
gnom_version4.1.3
quality_criteria AN1: 0.000; Oscil: 0.904; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.997; Smooth: 0.957
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4. Crystallography & Experiment

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5. Entities & Polymer Info (1)

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6. Citations (1)

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7. Files & Curves (10)