123d
DNA HELIX STRUCTURE AND REFINEMENT ALGORITHM: COMPARISON OF MODELS FOR D(CCAGGCM==5==CTGG) DERIVED FROM NUCLSQ, TNT, AND X-PLOR
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 123d |
| deposition_date | 1993-05-03 |
| title | DNA HELIX STRUCTURE AND REFINEMENT ALGORITHM: COMPARISON OF MODELS FOR D(CCAGGCM==5==CTGG) DERIVED FROM NUCLSQ, TNT, AND X-PLOR |
| keywords | B-DNA, DOUBLE HELIX, MODIFIED, DNA; DNA |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 12.47 Å |
| rg_electron | 11.88 Å |
| i0 | 2013990.00 |
| molecular_weight | 6102.0 kDa |
| excluded_volume | 5910 ų |
| envelope_volume | 7910 ų |
| shell_volume | 6391 ų |
| envelope_diameter | 41.2 Å |
| shell_rg | 15.87 Å |
| envelope_rg | 12.10 Å |
| shape_rg | 11.76 Å |
| total_rg | 12.74 Å |
| total_atoms | 406 |
| n_residues | 18 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 43.0 Å |
| rg_real | 12.51 Å |
| rg_real_error | 0.32 Å |
| i0_real | 2.0140e+06 |
| i0_real_error | 2.3220e+04 |
| rg_reciprocal | 12.51 Å |
| i0_reciprocal | 2014000.0000 |
| total_estimate | 0.6561 |
| solution_quality | REASONABLE a REASONABLE solution |
| n_peaks | 2 |
| r_peak_primary | 14.1 Å |
| skewness | 0.400 |
| kurtosis | -0.279 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 116600.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.773; Stabil: 1.000; Sysdev: 0.105; Positv: 1.000; Valcen: 0.910; Smooth: 0.980 |