140d
;SOLUTION STRUCTURE OF A CONSERVED DNA SEQUENCE FROM THE HIV-1 GENOME: RESTRAINED MOLECULAR DYNAMICS SIMULATION WITH DISTANCE AND TORSION ANGLE RESTRAINTS DERIVED FROM TWO-DIMENSIONAL NMR SPECTRA ;
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 140d |
| deposition_date | 1993-09-24 |
| title | ;SOLUTION STRUCTURE OF A CONSERVED DNA SEQUENCE FROM THE HIV-1 GENOME: RESTRAINED MOLECULAR DYNAMICS SIMULATION WITH DISTANCE AND TORSION ANGLE RESTRAINTS DERIVED FROM TWO-DIMENSIONAL NMR SPECTRA ; |
| keywords | DNA, DOUBLE HELIX, CONSERVED SEQUENCE OF HIV-1 GENOME; DNA |
| method | SOLUTION NMR |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 13.87 Å |
| rg_electron | 13.25 Å |
| i0 | 3256230.00 |
| molecular_weight | 7931.0 kDa |
| excluded_volume | 7696 ų |
| envelope_volume | 10809 ų |
| shell_volume | 7704 ų |
| envelope_diameter | 44.7 Å |
| shell_rg | 17.44 Å |
| envelope_rg | 13.22 Å |
| shape_rg | 13.12 Å |
| total_rg | 14.10 Å |
| total_atoms | 527 |
| n_residues | 26 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 44.1 Å |
| rg_real | 13.86 Å |
| rg_real_error | 0.29 Å |
| i0_real | 3.2560e+06 |
| i0_real_error | 3.6980e+04 |
| rg_reciprocal | 13.86 Å |
| i0_reciprocal | 3256000.0000 |
| total_estimate | 0.6807 |
| solution_quality | REASONABLE a REASONABLE solution |
| n_peaks | 2 |
| r_peak_primary | 15.6 Å |
| skewness | 0.273 |
| kurtosis | -0.445 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 162400.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.920; Stabil: 0.998; Sysdev: 0.368; Positv: 1.000; Valcen: 0.987; Smooth: 0.000 |