142d
;SOLUTION STRUCTURE OF A CONSERVED DNA SEQUENCE FROM THE HIV-1 GENOME: RESTRAINED MOLECULAR DYNAMICS SIMULATION WITH DISTANCE AND TORSION ANGLE RESTRAINTS DERIVED FROM TWO-DIMENSIONAL NMR SPECTRA ;
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 142d |
| deposition_date | 1993-09-24 |
| title | ;SOLUTION STRUCTURE OF A CONSERVED DNA SEQUENCE FROM THE HIV-1 GENOME: RESTRAINED MOLECULAR DYNAMICS SIMULATION WITH DISTANCE AND TORSION ANGLE RESTRAINTS DERIVED FROM TWO-DIMENSIONAL NMR SPECTRA ; |
| keywords | DNA, DOUBLE HELIX, CONSERVED SEQUENCE OF HIV-1 GENOME; DNA |
| method | SOLUTION NMR |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 13.73 Å |
| rg_electron | 13.10 Å |
| i0 | 3247960.00 |
| molecular_weight | 7931.0 kDa |
| excluded_volume | 7696 ų |
| envelope_volume | 10759 ų |
| shell_volume | 7717 ų |
| envelope_diameter | 43.4 Å |
| shell_rg | 17.32 Å |
| envelope_rg | 13.08 Å |
| shape_rg | 12.97 Å |
| total_rg | 13.95 Å |
| total_atoms | 527 |
| n_residues | 26 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 44.3 Å |
| rg_real | 13.72 Å |
| rg_real_error | 0.26 Å |
| i0_real | 3.2480e+06 |
| i0_real_error | 3.4340e+04 |
| rg_reciprocal | 13.73 Å |
| i0_reciprocal | 3248000.0000 |
| total_estimate | 0.9027 |
| solution_quality | EXCELLENT a EXCELLENT solution |
| n_peaks | 2 |
| r_peak_primary | 15.1 Å |
| skewness | 0.274 |
| kurtosis | -0.415 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 171000.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.917; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.984; Smooth: 0.996 |