145d
;Structure and thermodynamics of nonalternating C/G base pairs in Z-DNA: the 1.3 angstroms crystal structure of the asymmetric hexanucleotide D(M(5)CGGGM(5) CG)/D(M(5)CGCCM(5)CG) ;
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 145d |
| deposition_date | 1993-11-11 |
| title | ;Structure and thermodynamics of nonalternating C/G base pairs in Z-DNA: the 1.3 angstroms crystal structure of the asymmetric hexanucleotide D(M(5)CGGGM(5) CG)/D(M(5)CGCCM(5)CG) ; |
| keywords | Z-DNA, DOUBLE HELIX, MODIFIED, DNA; DNA |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 9.41 Å |
| rg_electron | 8.69 Å |
| i0 | 754749.00 |
| molecular_weight | 3653.0 kDa |
| excluded_volume | 3585 ų |
| envelope_volume | 4274 ų |
| shell_volume | 4745 ų |
| envelope_diameter | 28.1 Å |
| shell_rg | 12.92 Å |
| envelope_rg | 8.85 Å |
| shape_rg | 8.65 Å |
| total_rg | 9.68 Å |
| total_atoms | 388 |
| n_residues | 8 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 30.8 Å |
| rg_real | 9.37 Å |
| rg_real_error | 0.25 Å |
| i0_real | 7.5470e+05 |
| i0_real_error | 6.9880e+03 |
| rg_reciprocal | 9.37 Å |
| i0_reciprocal | 754700.0000 |
| total_estimate | 0.8909 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 11.7 Å |
| skewness | 0.207 |
| kurtosis | -0.309 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 43610.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.879; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.997; Smooth: 0.947 |