1agu
;THE SOLUTION NMR STRUCTURE OF THE C10R ADDUCT OF BENZO[A]PYRENE-DIOL-EPOXIDE AT THE N6 POSITION OF ADENINE OF AN 11 BASE-PAIR OLIGONUCLEOTIDE SEQUENCE CODING FOR AMINO ACIDS 60-62 OF THE PRODUCT OF THE N-RAS PROTOONCOGENE, MINIMIZED AVERAGE STRUCTURE ;
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 1agu |
| deposition_date | 1997-03-25 |
| title | ;THE SOLUTION NMR STRUCTURE OF THE C10R ADDUCT OF BENZO[A]PYRENE-DIOL-EPOXIDE AT THE N6 POSITION OF ADENINE OF AN 11 BASE-PAIR OLIGONUCLEOTIDE SEQUENCE CODING FOR AMINO ACIDS 60-62 OF THE PRODUCT OF THE N-RAS PROTOONCOGENE, MINIMIZED AVERAGE STRUCTURE ; |
| keywords | DNA DUPLEX, HUMAN N-RAS GENE, CODON 61 SEQUENCE, C10R-BPDE ADDUCT, INTERCALATION, N6-ADENINE ADDUCT, DEOXYRIBONUCLEIC ACID, DNA; DNA |
| method | SOLUTION NMR |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 13.60 Å |
| rg_electron | 12.99 Å |
| i0 | 2372330.00 |
| molecular_weight | 6994.0 kDa |
| excluded_volume | 6931 ų |
| envelope_volume | 9066 ų |
| shell_volume | 6796 ų |
| envelope_diameter | 45.7 Å |
| shell_rg | 16.93 Å |
| envelope_rg | 13.25 Å |
| shape_rg | 12.86 Å |
| total_rg | 13.81 Å |
| total_atoms | 733 |
| n_residues | 21 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 46.9 Å |
| rg_real | 13.68 Å |
| rg_real_error | 0.46 Å |
| i0_real | 2.3720e+06 |
| i0_real_error | 2.6160e+04 |
| rg_reciprocal | 13.68 Å |
| i0_reciprocal | 2372000.0000 |
| total_estimate | 0.8540 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 14.2 Å |
| skewness | 0.434 |
| kurtosis | -0.387 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 140400.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.786; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.783; Smooth: 0.958 |