1bjd
;SOLUTION STRUCTURE OF A DNA DODECAMER CONTAINING SINGLE G*T MISMATCHES USING RELAXATION MATRIX ANALYSIS AND RESTRAINED MOLECULAR DYNAMICS, NMR, 1 STRUCTURE ;
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 1bjd |
| deposition_date | 1998-06-24 |
| title | ;SOLUTION STRUCTURE OF A DNA DODECAMER CONTAINING SINGLE G*T MISMATCHES USING RELAXATION MATRIX ANALYSIS AND RESTRAINED MOLECULAR DYNAMICS, NMR, 1 STRUCTURE ; |
| keywords | DEOXYRIBONUCLEIC ACID, DNA, G*T MISMATCH; DNA |
| method | SOLUTION NMR |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 12.83 Å |
| rg_electron | 12.36 Å |
| i0 | 2803550.00 |
| molecular_weight | 7343.0 kDa |
| excluded_volume | 7127 ų |
| envelope_volume | 9190 ų |
| shell_volume | 7118 ų |
| envelope_diameter | 40.9 Å |
| shell_rg | 16.31 Å |
| envelope_rg | 12.46 Å |
| shape_rg | 12.26 Å |
| total_rg | 13.13 Å |
| total_atoms | 762 |
| n_residues | 24 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 42.6 Å |
| rg_real | 12.88 Å |
| rg_real_error | 0.32 Å |
| i0_real | 2.8040e+06 |
| i0_real_error | 3.3890e+04 |
| rg_reciprocal | 12.88 Å |
| i0_reciprocal | 2804000.0000 |
| total_estimate | 0.8457 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 12.9 Å |
| skewness | 0.448 |
| kurtosis | -0.265 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 470200.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.686; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.937; Smooth: 0.997 |