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1bxn

THE CRYSTAL STRUCTURE OF RUBISCO FROM ALCALIGENES EUTROPHUS TO 2.7 ANGSTROMS.

Method: X-RAY DIFFRACTION D_max: 131.9 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1bxn
deposition_date	1998-10-06
title	THE CRYSTAL STRUCTURE OF RUBISCO FROM ALCALIGENES EUTROPHUS TO 2.7 ANGSTROMS.
keywords	LYASE (CARBON-CARBON), LYASE; LYASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	42.54 Å
rg_electron	42.15 Å
i0	998461000.00
molecular_weight	257810.0 kDa
excluded_volume	320850 Å³
envelope_volume	418220 Å³
shell_volume	78229 Å³
envelope_diameter	133.1 Å
shell_rg	50.39 Å
envelope_rg	42.44 Å
shape_rg	42.18 Å
total_rg	42.40 Å
total_atoms	18144
n_residues	2296
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	131.9 Å
rg_real	42.34 Å
rg_real_error	0.90 Å
i0_real	9.9850e+08
i0_real_error	1.6940e+07
rg_reciprocal	42.53 Å
i0_reciprocal	998700000.0000
total_estimate	0.8906
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	57.0 Å
skewness	0.120
kurtosis	-0.539
angular_range	— – 0.1850 Å⁻¹
current_alpha	0.0000
highest_alpha	265800000.0000
n_real_points	38
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.938; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.982; Smooth: 0.778

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	PROTEIN (RIBULOSE BISPHOSPHATE CARBOXYLASE LARGE CHAIN)
formula_weight	53703.9 kDa
ec_number	4.1.1.39
src_method	man
entity_count	4

Polymer

type	polypeptide(L)
strand_id	A,C,E,G
atom_count	18144

MNAPESVQAKPRKRYDAGVMKYKMGYWDGDYVPKDTDLLALFRITPQDGVDPVEAAAAVAGESSTATWTVVWTDRLTACDMYRAKAYRVDPVPNNPEQFFCYVAYDLSLFEEGSIANLTASIIGNVFSFKPIKAARLEDMRFPVAYVKTFAGPSTGIIVERERLDKFGRPLLGATTKPKLGLSGRNYGRVVYEGLKGGLDFMKDDENINSQPFMHWRDRFLFVMDAVNKASAATGEVKGSYLNVTAGTMEEMYRRAEFAKSLGSVIIMVDLIVGWTCIQSMSNWCRQNDMILHLHRAGHGTYTRQKNHGVSFRVIAKWLRLAGVDHMHTGTAVGKLEGDPLTVQGYYNVCRDAYTQTDLTRGLFFDQDWASLRKVMPVASGGIHAGQMHQLIHLFGDDVVLQFGGGTIGHPQGIQAGATANRVALEAMVLARNEGRDILNEGPEILRDAARWCGPLRAALDTWGDISFNYTPTDTSDFAPTASVA

Source

organism	Cupriavidus necator
ncbi_taxonomy_id	106590

Entity 2 polymer

description	PROTEIN (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN)
formula_weight	16058.9 kDa
ec_number	4.1.1.39
src_method	man
entity_count	4

Polymer

type	polypeptide(L)
strand_id	I,J,K,L

MRITQGTFSFLPELTDEQITKQLEYCLNQGWAVGLEYTDDPHPRNTYWEMFGLPMFDLRDAAGILMEINNARNTFPNHYIRVTAFDSTHTVESVVMSFIVNRPADEPGFRLVRQEEPGRTLRYSIESYAVQAGPEGSRY

Source

organism	Cupriavidus necator
ncbi_taxonomy_id	106590

Entity 3 non-polymer

description	PHOSPHATE ION
formula_weight	95.0 kDa
src_method	syn
entity_count	8

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6. Citations (2)

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length_a	112.000 Å
length_b	112.000 Å
length_c	402.700 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	32

space_group	P 43 21 2
int_tables_number	96
crystal_system	—

resolution	2.700 Å
resolution_low	15.000 Å
r_factor	0.2660
r_work	0.2660
r_free	0.3220

fit	/app/data/saxs_computation/bx/1bxn/1bxn.fit
pddf	/app/data/pr_computation/bx/1bxn/1bxn.pr.out
profile	/app/data/saxs_computation/bx/1bxn/1bxn.dat

THE CRYSTAL STRUCTURE OF RUBISCO FROM ALCALIGENES EUTROPHUS TO 2.7 ANGSTROMS.

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 non-polymer

6. Citations (2)

7. Files & Curves (10)

Files (7)

Curves (3)