STRUCTURES OF APO AND COMPLEXED ESCHERICHIA COLI GLYCINAMIDE RIBONUCLEOTIDE TRANSFORMYLASE

Method: X-RAY DIFFRACTION D_max: 91.4 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1cdd
deposition_date	1992-05-15
title	STRUCTURES OF APO AND COMPLEXED ESCHERICHIA COLI GLYCINAMIDE RIBONUCLEOTIDE TRANSFORMYLASE
keywords	TRANSFERASE(FORMYL); TRANSFERASE(FORMYL)
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	25.38 Å
rg_electron	24.83 Å
i0	29582700.00
molecular_weight	41405.0 kDa
excluded_volume	51649 Å³
envelope_volume	63105 Å³
shell_volume	22690 Å³
envelope_diameter	94.6 Å
shell_rg	30.50 Å
envelope_rg	25.45 Å
shape_rg	24.86 Å
total_rg	25.40 Å
total_atoms	2918
n_residues	378
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	91.4 Å
rg_real	25.56 Å
rg_real_error	0.73 Å
i0_real	2.9580e+07
i0_real_error	4.2950e+05
rg_reciprocal	25.51 Å
i0_reciprocal	29580000.0000
total_estimate	0.8122
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	26.1 Å
skewness	0.573
kurtosis	-0.141
angular_range	— – 0.3150 Å⁻¹
current_alpha	0.0000
highest_alpha	4377000.0000
n_real_points	64
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.626; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.676; Smooth: 0.999

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (3)

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length_a	140.900 Å
length_b	97.600 Å
length_c	102.400 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	16

space_group	C 2 2 21
int_tables_number	20
crystal_system	—

resolution	2.800 Å
resolution_low	— Å
r_factor	0.2250
r_work	—
r_free	—

description	PHOSPHORIBOSYL-GLYCINAMIDE FORMYLTRANSFERASE
formula_weight	23266.3 kDa
ec_number	2.1.2.2
src_method	man
entity_count	2

type	polypeptide(L)
strand_id	A,B
atom_count	2918

STRUCTURES OF APO AND COMPLEXED ESCHERICHIA COLI GLYCINAMIDE RIBONUCLEOTIDE TRANSFORMYLASE

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 non-polymer

6. Citations (3)

7. Files & Curves (10)

Files (7)

Curves (3)

description	PHOSPHATE ION
formula_weight	95.0 kDa
src_method	syn
entity_count	2

fit	/app/data/saxs_computation/cd/1cdd/1cdd.fit
pddf	/app/data/pr_computation/cd/1cdd/1cdd.pr.out
profile	/app/data/saxs_computation/cd/1cdd/1cdd.dat

organism	Escherichia coli
ncbi_taxonomy_id	562