← Back to search

1cp8

;NMR STRUCTURE OF DNA (5'-D(TTGGCCAA)2-3') COMPLEXED WITH NOVEL ANTITUMOR DRUG UCH9 ;

Method: SOLUTION NMR D_max: 40.2 Å Quality: GOOD

SAXS Profile

P(r) Distribution

▼

1. Structure Basics

entry_id	1cp8
deposition_date	1999-06-11
title	;NMR STRUCTURE OF DNA (5'-D(TTGGCCAA)2-3') COMPLEXED WITH NOVEL ANTITUMOR DRUG UCH9 ;
keywords	DNA; DNA
method	SOLUTION NMR

▼

Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

▼

2. SAXS Parameters (CRYSOL)

rg_guinier	12.29 Å
rg_electron	11.32 Å
i0	1931840.00
molecular_weight	7286.0 kDa
excluded_volume	7994 Å³
envelope_volume	9157 Å³
shell_volume	7305 Å³
envelope_diameter	38.8 Å
shell_rg	16.28 Å
envelope_rg	11.76 Å
shape_rg	11.13 Å
total_rg	12.60 Å
total_atoms	835
n_residues	16
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

▼

3. P(r) Analysis (GNOM)

dmax	40.2 Å
rg_real	12.28 Å
rg_real_error	0.28 Å
i0_real	1.9320e+06
i0_real_error	2.1830e+04
rg_reciprocal	12.28 Å
i0_reciprocal	1932000.0000
total_estimate	0.8987
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	13.8 Å
skewness	0.280
kurtosis	-0.374
angular_range	— – 0.5000 Å⁻¹
current_alpha	0.0000
highest_alpha	208600.0000
n_real_points	80
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.901; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.980; Smooth: 0.997

▶

4. Crystallography & Experiment

▶

5. Entities & Polymer Info (5)

Entity 1 polymer

description	;DNA (5'-D(PTPTPGPGPCPCPAPA)-3') ;
formula_weight	2426.6 kDa
src_method	syn
entity_count	2

Polymer

type	polydeoxyribonucleotide
strand_id	A,B
atom_count	835

TTGGCCAA

Entity 2 branched

description	;beta-D-Olivopyranose-(1-3)-2,6-dideoxy-4-O-methyl-beta-D-glucopyranose-(1-3)-2,6-dideoxy-beta-D-galactopyranose-(1-3)-beta-D-Olivopyranose ;
formula_weight	552.6 kDa
src_method	syn
entity_count	2

Entity 3 non-polymer

description	beta-D-Olivopyranose
formula_weight	148.2 kDa
src_method	syn
entity_count	2

Entity 4 non-polymer

description	1,2-HYDRO-1-OXY-3,4-HYDRO-3-(1-METHOXY-2-OXY-3,4-DIHYDROXYPENTYL)-8,9-DIHYDROXY-7-(SEC-BUTYL)-ANTHRACENE
formula_weight	430.5 kDa
src_method	syn
entity_count	2

Entity 5 non-polymer

description	MAGNESIUM ION
formula_weight	24.3 kDa
src_method	syn
entity_count	1

▶

6. Citations (1)

▶

length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	1

space_group	P 1
int_tables_number	1
crystal_system	—

fit	/app/data/saxs_computation/cp/1cp8/1cp8.fit
pddf	/app/data/pr_computation/cp/1cp8/1cp8.pr.out
profile	/app/data/saxs_computation/cp/1cp8/1cp8.dat

;NMR STRUCTURE OF DNA (5'-D(TTGGCCAA)2-3') COMPLEXED WITH NOVEL ANTITUMOR DRUG UCH9 ;

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

5. Entities & Polymer Info (5)

Entity 1 polymer

Polymer

Entity 2 branched

Entity 3 non-polymer

Entity 4 non-polymer

Entity 5 non-polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)