1db6
;SOLUTION STRUCTURE OF THE DNA APTAMER 5'-CGACCAACGTGTCGCCTGGTCG-3' COMPLEXED WITH ARGININAMIDE ;
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 1db6 |
| deposition_date | 1999-11-02 |
| title | ;SOLUTION STRUCTURE OF THE DNA APTAMER 5'-CGACCAACGTGTCGCCTGGTCG-3' COMPLEXED WITH ARGININAMIDE ; |
| keywords | APTAMER, ARGININE, ARGININAMIDE, SINGLE-STRAND, HAIRPIN, SELEX, DNA; DNA |
| method | SOLUTION NMR |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 12.30 Å |
| rg_electron | 12.19 Å |
| i0 | 190639000.00 |
| molecular_weight | 69067.0 kDa |
| excluded_volume | 67015 ų |
| envelope_volume | 12641 ų |
| shell_volume | 8805 ų |
| envelope_diameter | 44.7 Å |
| shell_rg | 17.77 Å |
| envelope_rg | 13.22 Å |
| shape_rg | 12.04 Å |
| total_rg | 12.56 Å |
| total_atoms | 7210 |
| n_residues | 220 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 42.9 Å |
| rg_real | 12.35 Å |
| rg_real_error | 0.36 Å |
| i0_real | 1.9060e+08 |
| i0_real_error | 2.1230e+06 |
| rg_reciprocal | 12.35 Å |
| i0_reciprocal | 190600000.0000 |
| total_estimate | 0.8561 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 12.5 Å |
| skewness | 0.366 |
| kurtosis | -0.515 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 148700.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.793; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.747; Smooth: 0.998 |