1dkd
CRYSTAL STRUCTURE OF A GROEL (APICAL DOMAIN) AND A DODECAMERIC PEPTIDE COMPLEX
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 1dkd |
| deposition_date | 1999-12-07 |
| title | CRYSTAL STRUCTURE OF A GROEL (APICAL DOMAIN) AND A DODECAMERIC PEPTIDE COMPLEX |
| keywords | ;MOLECULAR CHAPERON, HSP60, PROTEIN FOLDING, PEPTIDE SELECTION, PHAGE DISPLAY, PEPTIDE BINDING GROOVE FORMED BY PAIRED HELICES SUBSTRATE PEPTIDE IN BETA-SHEET, CHAPERONE ;; CHAPERONE |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 33.26 Å |
| rg_electron | 32.22 Å |
| i0 | 65769500.00 |
| molecular_weight | 67236.0 kDa |
| excluded_volume | 85551 ų |
| envelope_volume | 114250 ų |
| shell_volume | 29147 ų |
| envelope_diameter | 102.9 Å |
| shell_rg | 39.86 Å |
| envelope_rg | 31.12 Å |
| shape_rg | 32.21 Å |
| total_rg | 32.95 Å |
| total_atoms | 4722 |
| n_residues | 629 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 100.6 Å |
| rg_real | 33.12 Å |
| rg_real_error | 0.80 Å |
| i0_real | 6.5770e+07 |
| i0_real_error | 1.0510e+06 |
| rg_reciprocal | 33.18 Å |
| i0_reciprocal | 65770000.0000 |
| total_estimate | 0.8928 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 50.3 Å |
| skewness | 0.023 |
| kurtosis | -0.813 |
| angular_range | — – 0.2400 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 22080000.0000 |
| n_real_points | 49 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.904; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.978; Smooth: 0.913 |