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1dml

CRYSTAL STRUCTURE OF HERPES SIMPLEX UL42 BOUND TO THE C-TERMINUS OF HSV POL

Method: X-RAY DIFFRACTION D_max: 174.0 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1dml
deposition_date	1999-12-14
title	CRYSTAL STRUCTURE OF HERPES SIMPLEX UL42 BOUND TO THE C-TERMINUS OF HSV POL
keywords	herpes simplex virus, dna synthesis, sliding clamps, PCNA, processivity, DNA BINDING PROTEIN-TRANSFERASE COMPLEX; DNA BINDING PROTEIN/TRANSFERASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	45.19 Å
rg_electron	45.95 Å
i0	266154000.00
molecular_weight	133740.0 kDa
excluded_volume	168100 Å³
envelope_volume	231820 Å³
shell_volume	48442 Å³
envelope_diameter	181.6 Å
shell_rg	41.99 Å
envelope_rg	46.23 Å
shape_rg	45.94 Å
total_rg	45.76 Å
total_atoms	9414
n_residues	1233
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	174.0 Å
rg_real	46.03 Å
rg_real_error	2.65 Å
i0_real	2.6620e+08
i0_real_error	6.1670e+06
rg_reciprocal	45.19 Å
i0_reciprocal	265900000.0000
total_estimate	0.7240
solution_quality	REASONABLE a REASONABLE solution
n_peaks	1
r_peak_primary	39.8 Å
skewness	0.756
kurtosis	0.155
angular_range	— – 0.1750 Å⁻¹
current_alpha	0.0000
highest_alpha	29190000.0000
n_real_points	36
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.456; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.320; Smooth: 0.720

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

Entity 1 polymer

description	DNA POLYMERASE PROCESSIVITY FACTOR
formula_weight	34231.9 kDa
src_method	man
entity_count	4

Polymer

type	polypeptide(L)
strand_id	A,C,E,G
atom_count	9414

MTDSPGGVAPASPVEDASDASLGQPEEGAPCQVVLQGAELNGILQAFAPLRTSLLDSLLVMGDRGILIHNTIFGEQVFLPLEHSQFSRYRWRGPTAAFLSLVDQKRSLLSVFRANQYPDLRRVELAITGQAPFRTLVQRIWTTTSDGEAVELASETLMKRELTSFVVLVPQGTPDVQLRLTRPQLTKVLNATGADSATPTTFELGVNGKFSVFTTSTCVTFAAREEGVSSSTSTQVQILSNALTKAGQAAANAKTVYGENTHRTFSVVVDDCSMRAVLRRLQVGGGTLKFFLTTPVPSLCVTATGPNAVSAVFLLKPQK

Source

organism	Human herpesvirus 1
common_name	Herpes simplex virus type 1
ncbi_taxonomy_id	10298
host_organism	Escherichia coli

Entity 2 polymer

description	DNA POLYMERASE
formula_weight	3751.2 kDa
ec_number	2.7.7.7
src_method	man
entity_count	4

Polymer

type	polypeptide(L)
strand_id	B,D,F,H

DDVAARLRAAGFGAVGAGATAEETRRMLHRAFDTLA

Source

organism	Human herpesvirus 1
common_name	Herpes simplex virus type 1
ncbi_taxonomy_id	10298
host_organism	Escherichia coli

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6. Citations (1)

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length_a	54.320 Å
length_b	100.070 Å
length_c	129.530 Å
angle_alpha	90.00 °
angle_beta	100.62 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	2.700 Å
resolution_low	12.000 Å
r_factor	0.2300
r_work	0.2300
r_free	0.2810

fit	/app/data/saxs_computation/dm/1dml/1dml.fit
pddf	/app/data/pr_computation/dm/1dml/1dml.pr.out
profile	/app/data/saxs_computation/dm/1dml/1dml.dat

CRYSTAL STRUCTURE OF HERPES SIMPLEX UL42 BOUND TO THE C-TERMINUS OF HSV POL

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)