1dnm
CRYSTAL STRUCTURE AND SEQUENCE-DEPENDENT CONFORMATION OF THE A.G MIS-PAIRED OLIGONUCLEOTIDE D(CGCAAGCTGGCG)
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 1dnm |
| deposition_date | 1990-06-22 |
| title | CRYSTAL STRUCTURE AND SEQUENCE-DEPENDENT CONFORMATION OF THE A.G MIS-PAIRED OLIGONUCLEOTIDE D(CGCAAGCTGGCG) |
| keywords | B-DNA, DOUBLE HELIX, MISMATCHED, DNA; DNA |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 13.69 Å |
| rg_electron | 13.30 Å |
| i0 | 2848130.00 |
| molecular_weight | 7363.0 kDa |
| excluded_volume | 7056 ų |
| envelope_volume | 9642 ų |
| shell_volume | 7003 ų |
| envelope_diameter | 48.5 Å |
| shell_rg | 17.27 Å |
| envelope_rg | 13.48 Å |
| shape_rg | 13.20 Å |
| total_rg | 14.01 Å |
| total_atoms | 490 |
| n_residues | 24 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 46.9 Å |
| rg_real | 13.78 Å |
| rg_real_error | 0.39 Å |
| i0_real | 2.8480e+06 |
| i0_real_error | 3.0400e+04 |
| rg_reciprocal | 13.77 Å |
| i0_reciprocal | 2848000.0000 |
| total_estimate | 0.7611 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 14.2 Å |
| skewness | 0.465 |
| kurtosis | -0.313 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 209900.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.683; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.843; Smooth: 0.000 |