L1 protein of human papillomavirus 16

Method: X-RAY DIFFRACTION D_max: 103.0 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1dzl
deposition_date	2000-03-01
title	L1 protein of human papillomavirus 16
keywords	VIRUS, ICOSAHEDRAL; VIRUS
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	28.83 Å
rg_electron	28.25 Å
i0	42663700.00
molecular_weight	50800.0 kDa
excluded_volume	63562 Å³
envelope_volume	85549 Å³
shell_volume	26895 Å³
envelope_diameter	112.9 Å
shell_rg	33.19 Å
envelope_rg	29.35 Å
shape_rg	28.25 Å
total_rg	28.80 Å
total_atoms	3578
n_residues	455
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	103.0 Å
rg_real	29.05 Å
rg_real_error	1.02 Å
i0_real	4.2660e+07
i0_real_error	7.2000e+05
rg_reciprocal	28.95 Å
i0_reciprocal	42660000.0000
total_estimate	0.8190
solution_quality	GOOD a GOOD solution
n_peaks	2
r_peak_primary	28.1 Å
skewness	0.579
kurtosis	-0.039
angular_range	— – 0.2750 Å⁻¹
current_alpha	0.0000
highest_alpha	6445000.0000
n_real_points	56
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.702; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.687; Smooth: 0.851

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4. Crystallography & Experiment

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5. Entities & Polymer Info (1)

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6. Citations (1)

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length_a	387.000 Å
length_b	387.000 Å
length_c	387.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	240

space_group	P 21 3
int_tables_number	198
crystal_system	—

resolution	3.500 Å
resolution_low	15.000 Å
r_factor	0.2800
r_work	0.2800
r_free	0.2900

description	LATE MAJOR CAPSID PROTEIN L1
formula_weight	56441.1 kDa
mutation	YES
src_method	man
entity_count	1

type	polypeptide(L)
strand_id	A
atom_count	3578

L1 protein of human papillomavirus 16

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (1)

Entity 1 polymer

Polymer

Source

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	HUMAN PAPILLOMAVIRUS TYPE 16
ncbi_taxonomy_id	333760
host_organism	ESCHERICHIA COLI

fit	/app/data/saxs_computation/dz/1dzl/1dzl.fit
pddf	/app/data/pr_computation/dz/1dzl/1dzl.pr.out
profile	/app/data/saxs_computation/dz/1dzl/1dzl.dat