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1e58

E.coli cofactor-dependent phosphoglycerate mutase

Method: X-RAY DIFFRACTION D_max: 59.0 Å Quality: REASONABLE

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1e58
deposition_date	2000-07-19
title	E.coli cofactor-dependent phosphoglycerate mutase
keywords	PHOSPHOHISTIDINE, GLYCOLYSIS AND GLUCONEOGENESIS, PHOSPHOGLYCERATE MUTASE, ISOMERASE; ISOMERASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	18.72 Å
rg_electron	17.65 Å
i0	14131500.00
molecular_weight	28432.0 kDa
excluded_volume	35647 Å³
envelope_volume	40723 Å³
shell_volume	19037 Å³
envelope_diameter	60.4 Å
shell_rg	24.19 Å
envelope_rg	17.89 Å
shape_rg	17.65 Å
total_rg	18.61 Å
total_atoms	2008
n_residues	246
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	59.0 Å
rg_real	18.61 Å
rg_real_error	0.30 Å
i0_real	1.4130e+07
i0_real_error	1.6420e+05
rg_reciprocal	18.63 Å
i0_reciprocal	14130000.0000
total_estimate	0.7354
solution_quality	REASONABLE a REASONABLE solution
n_peaks	2
r_peak_primary	23.4 Å
skewness	0.189
kurtosis	-0.375
angular_range	— – 0.4250 Å⁻¹
current_alpha	0.0000
highest_alpha	3672000.0000
n_real_points	74
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.887; Stabil: 1.000; Sysdev: 0.313; Positv: 1.000; Valcen: 0.992; Smooth: 0.964

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	PHOSPHOGLYCERATE MUTASE
formula_weight	28544.2 kDa
ec_number	5.4.2.1
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	2505

AVTKLVLVRHGESQWNKENRFTGWYDVDLSEKGVSEAKAAGKLLKEEGYSFDFAYTSVLKRAIHTLWNVLDELDQAWLPVEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDRVIPYWNETILPRMKSGERVIIAAHGNSLRALVKYLDNMSEEEILELNIPTGVPLVYEFDENFKPLKRYYLGNADEIAAKAAAVANQGKAK

Source

organism	ESCHERICHIA COLI
ncbi_taxonomy_id	83333
host_organism	ESCHERICHIA COLI

Entity 2 non-polymer

description	SULFATE ION
formula_weight	96.1 kDa
src_method	syn
entity_count	2

Entity 3 non-polymer

description	CHLORIDE ION
formula_weight	35.5 kDa
src_method	syn
entity_count	1

Entity 4 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	425

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6. Citations (1)

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length_a	61.570 Å
length_b	113.000 Å
length_c	40.260 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	4

space_group	P 21 21 2
int_tables_number	18
crystal_system	—

resolution	1.250 Å
resolution_low	10.000 Å
r_factor	0.1210
r_work	—
r_free	0.1680

fit	/app/data/saxs_computation/e5/1e58/1e58.fit
pddf	/app/data/pr_computation/e5/1e58/1e58.pr.out
profile	/app/data/saxs_computation/e5/1e58/1e58.dat

E.coli cofactor-dependent phosphoglycerate mutase

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction