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1es0

CRYSTAL STRUCTURE OF THE MURINE CLASS II ALLELE I-A(G7) COMPLEXED WITH THE GLUTAMIC ACID DECARBOXYLASE (GAD65) PEPTIDE 207-220

Method: X-RAY DIFFRACTION D_max: 83.8 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1es0
deposition_date	2000-04-07
title	CRYSTAL STRUCTURE OF THE MURINE CLASS II ALLELE I-A(G7) COMPLEXED WITH THE GLUTAMIC ACID DECARBOXYLASE (GAD65) PEPTIDE 207-220
keywords	HISTOCOMPATIBILITY ANTIGEN, CLASS II MHC I-A(G7), IMMUNE SYSTEM; IMMUNE SYSTEM
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	24.10 Å
rg_electron	23.19 Å
i0	30282700.00
molecular_weight	42536.0 kDa
excluded_volume	53247 Å³
envelope_volume	64096 Å³
shell_volume	23495 Å³
envelope_diameter	86.8 Å
shell_rg	29.59 Å
envelope_rg	23.52 Å
shape_rg	23.16 Å
total_rg	24.07 Å
total_atoms	3012
n_residues	372
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	83.8 Å
rg_real	24.12 Å
rg_real_error	0.71 Å
i0_real	3.0280e+07
i0_real_error	4.4450e+05
rg_reciprocal	24.12 Å
i0_reciprocal	30280000.0000
total_estimate	0.7925
solution_quality	GOOD a GOOD solution
n_peaks	3
r_peak_primary	27.5 Å
skewness	0.377
kurtosis	-0.301
angular_range	— – 0.3300 Å⁻¹
current_alpha	0.0000
highest_alpha	9645000.0000
n_real_points	65
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.796; Stabil: 0.998; Sysdev: 1.000; Positv: 1.000; Valcen: 0.916; Smooth: 0.000

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN
formula_weight	21623.1 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	A
atom_count	3088

EDDIEADHVGFYGTTVYQSPGDIGQYTHEFDGDELFYVDLDKKKTVWRLPEFGQLILFEPQGGLQNIAAEKHNLGILTKRSNFTPATNEAPQATVFPKSPVLLGQPNTLICFVDNIFPPVINITWLRNSKSVTDGVYETSFLVNRDHSFHKLSYLTFIPSDDDIYDCKVEHWGLEEPVLKHWSSADLVPR

Source

organism	Mus musculus
common_name	mouse
ncbi_taxonomy_id	10090

Entity 2 polymer

description	65 KD GLUTAMIC ACID DECARBOXYLASE+H-2 CLASS II HISTOCOMPATIBILITY ANTIGEN
formula_weight	25563.4 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	B

GSHSRGYEIAPVFVLLEYVTGSGSGSGDSERHFVHQFKGECYFTNGTQRIRLVTRYIYNREEYLRFDSDVGEYRAVTELGRHSAEYYNKQYLERTRAELDTACRHNYEETEVPTSLRRLEQPNVAISLSRTEALNHHNTLVCSVTDFYPAKIKVRWFRNGQEETVGVSSTQLIRNGDWTFQVLVMLEMTPHQGEVYTCHVEHPSLKSPITVEWSSADLVPR

Source

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606

Entity 3 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	76

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6. Citations (1)

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length_a	95.149 Å
length_b	110.123 Å
length_c	96.084 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	8

space_group	C 2 2 21
int_tables_number	20
crystal_system	—

resolution	2.600 Å
resolution_low	39.960 Å
r_factor	0.2100
r_work	0.2100
r_free	0.2580

fit	/app/data/saxs_computation/es/1es0/1es0.fit
pddf	/app/data/pr_computation/es/1es0/1es0.pr.out
profile	/app/data/saxs_computation/es/1es0/1es0.dat

CRYSTAL STRUCTURE OF THE MURINE CLASS II ALLELE I-A(G7) COMPLEXED WITH THE GLUTAMIC ACID DECARBOXYLASE (GAD65) PEPTIDE 207-220

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)