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1ez0

CRYSTAL STRUCTURE OF THE NADP+ DEPENDENT ALDEHYDE DEHYDROGENASE FROM VIBRIO HARVEYI.

Method: X-RAY DIFFRACTION D_max: 142.8 Å Quality: GOOD

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1ez0
deposition_date	2000-05-09
title	CRYSTAL STRUCTURE OF THE NADP+ DEPENDENT ALDEHYDE DEHYDROGENASE FROM VIBRIO HARVEYI.
keywords	Nucleotide binding domain, NADP+, OXIDOREDUCTASE; OXIDOREDUCTASE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	42.99 Å
rg_electron	42.61 Å
i0	715879000.00
molecular_weight	217260.0 kDa
excluded_volume	270390 Å³
envelope_volume	339200 Å³
shell_volume	65588 Å³
envelope_diameter	145.4 Å
shell_rg	48.52 Å
envelope_rg	42.03 Å
shape_rg	42.60 Å
total_rg	42.88 Å
total_atoms	15299
n_residues	2010
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	142.8 Å
rg_real	42.98 Å
rg_real_error	1.35 Å
i0_real	7.1590e+08
i0_real_error	1.2660e+07
rg_reciprocal	42.99 Å
i0_reciprocal	715900000.0000
total_estimate	0.8923
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	46.3 Å
skewness	0.278
kurtosis	-0.547
angular_range	— – 0.1850 Å⁻¹
current_alpha	0.0000
highest_alpha	155100000.0000
n_real_points	38
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.902; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.995; Smooth: 0.893

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	ALDEHYDE DEHYDROGENASE
formula_weight	54509.3 kDa
ec_number	1.2.1.5
src_method	man
entity_count	4

Polymer

type	polypeptide(L)
strand_id	A,B,C,D
atom_count	15951

MNPQTDNVFYATNAFTGEALPLAFPVHTEVEVNQAATAAAKVARDFRRLNNSKRASLLRTIASELEARSDDIIARAHLETALPEVRLTGEIARTANQLRLFADVVNSGSYHQAILDTPNPTRAPLPKPDIRRQQIALGPVAVFGASNFPLAFSAAGGDTASALAAGCPVIVKGHTAHPGTSQIVAECIEQALKQEQLPQAIFTLLQGNQRALGQALVSHPEIKAVGFTGSVGGGRALFNLAHERPEPIPFYGELGAINPTFIFPSAMRAKADLADQFVASMTMGCGQFCTKPGVVFALNTPETQAFIETAQSLIRQQSPSTLLTPGIRDSYQSQVVSRGSDDGIDVTFSQAESPCVASALFVTSSENWRKHPAWEEEIFGPQSLIVVCENVADMLSLSEMLAGSLTATIHATEEDYPQVSQLIPRLEEIAGRLVFNGWPTGVEVGYAMVHGGPYPASTHSASTSVGAEAIHRWLRPVAYQALPESLLPDSLKAENPLEIARAVDGKAAHS

Source

organism	Vibrio harveyi
ncbi_taxonomy_id	669
host_organism	Escherichia coli

Entity 2 non-polymer

description	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
formula_weight	743.4 kDa
src_method	syn
entity_count	4

Entity 3 water

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	652

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6. Citations (2)

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length_a	79.380 Å
length_b	131.180 Å
length_c	92.540 Å
angle_alpha	90.00 °
angle_beta	92.49 °
angle_gamma	90.00 °
z_pdb	8

space_group	P 1 21 1
int_tables_number	4
crystal_system	—

resolution	2.100 Å
resolution_low	26.440 Å
r_factor	—
r_work	0.2150
r_free	0.2460

fit	/app/data/saxs_computation/ez/1ez0/1ez0.fit
pddf	/app/data/pr_computation/ez/1ez0/1ez0.pr.out
profile	/app/data/saxs_computation/ez/1ez0/1ez0.dat

CRYSTAL STRUCTURE OF THE NADP+ DEPENDENT ALDEHYDE DEHYDROGENASE FROM VIBRIO HARVEYI.

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

Diffraction