CRYSTAL STRUCTURE OF CHEMOKINE DOMAIN OF FRACTALKINE

Method: X-RAY DIFFRACTION D_max: 65.7 Å Quality: EXCELLENT

SAXS Profile

P(r) Distribution

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1. Structure Basics

entry_id	1f2l
deposition_date	2000-05-26
title	CRYSTAL STRUCTURE OF CHEMOKINE DOMAIN OF FRACTALKINE
keywords	CHEMOATTRACTANT, Fractalkine, neurotactin, CYTOKINE; CYTOKINE
method	X-RAY DIFFRACTION

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	21.01 Å
rg_electron	20.19 Å
i0	17040400.00
molecular_weight	30236.0 kDa
excluded_volume	37591 Å³
envelope_volume	46607 Å³
shell_volume	19549 Å³
envelope_diameter	68.0 Å
shell_rg	25.97 Å
envelope_rg	19.99 Å
shape_rg	20.11 Å
total_rg	21.19 Å
total_atoms	2105
n_residues	262
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	65.7 Å
rg_real	20.92 Å
rg_real_error	0.30 Å
i0_real	1.7040e+07
i0_real_error	2.1940e+05
rg_reciprocal	20.94 Å
i0_reciprocal	17040000.0000
total_estimate	0.9100
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	1
r_peak_primary	23.8 Å
skewness	0.163
kurtosis	-0.576
angular_range	— – 0.3800 Å⁻¹
current_alpha	0.0000
highest_alpha	2801000.0000
n_real_points	70
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.947; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.983

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4. Crystallography & Experiment

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5. Entities & Polymer Info (2)

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6. Citations (1)

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length_a	110.473 Å
length_b	110.473 Å
length_c	123.994 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	120.00 °
z_pdb	48

space_group	P 61 2 2
int_tables_number	178
crystal_system	—

resolution	2.000 Å
resolution_low	15.000 Å
r_factor	0.2375
r_work	0.2377
r_free	0.3212

description	FRACTALKINE
formula_weight	8656.0 kDa
src_method	man
entity_count	4

type	polypeptide(L)
strand_id	A,B,C,D
atom_count	2369

CRYSTAL STRUCTURE OF CHEMOKINE DOMAIN OF FRACTALKINE

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

Refinement

5. Entities & Polymer Info (2)

Entity 1 polymer

Polymer

Source

Entity 2 water

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)

organism	Homo sapiens
common_name	human
ncbi_taxonomy_id	9606
host_organism	Escherichia coli

description	water
formula_weight	18.0 kDa
src_method	nat
entity_count	264

fit	/app/data/saxs_computation/f2/1f2l/1f2l.fit
pddf	/app/data/pr_computation/f2/1f2l/1f2l.pr.out
profile	/app/data/saxs_computation/f2/1f2l/1f2l.dat