SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
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| 条目编号 entry_id | 1lpw |
| 沉积日期 deposition_date | 2002-05-08 |
| 结构标题 title | Solution structure of the yeast spliceosomal U2 snRNA-intron branch site helix featuring a conserved pseudouridine |
| 关键词 keywords | U2 snRNA, branch site, pseudouridine, RNA; RNA |
| 实验方法 method | SOLUTION NMR |
| 回转半径 Rg (Guinier) rg_guinier | 11.49 Å |
| 回转半径 Rg (电子) rg_electron | 11.60 Å |
| 零角强度 I(0) i0 | 125193000.00 |
| 分子量 molecular_weight | 53989.0 kDa |
| 排除体积 excluded_volume | 50979 ų |
| 包络体积 envelope_volume | 9687 ų |
| 水化壳体积 shell_volume | 7448 ų |
| 包络直径 envelope_diameter | 42.4 Å |
| 壳层 Rg shell_rg | 16.69 Å |
| 包络 Rg envelope_rg | 12.46 Å |
| 形状 Rg shape_rg | 11.49 Å |
| 总 Rg total_rg | 11.89 Å |
| 总原子数 total_atoms | 5454 |
| 残基数 n_residues | 162 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
| 最大尺寸 Dmax dmax | 39.6 Å |
| Rg (实空间) rg_real | 11.53 Å |
| Rg 误差 (实空间) rg_real_error | 0.34 Å |
| I(0) (实空间) i0_real | 1.2520e+08 |
| I(0) 误差 (实空间) i0_real_error | 1.3680e+06 |
| Rg (倒空间) rg_reciprocal | 11.53 Å |
| I(0) (倒空间) i0_reciprocal | 125200000.0000 |
| 解质量估计 total_estimate | 0.6131 |
| 解质量评级 solution_quality |
REASONABLE
a REASONABLE solution
|
| P(r) 峰数 n_peaks | 2 |
| 主峰位置 r_peak_primary | 14.5 Å |
| 偏度 Skewness skewness | 0.375 |
| 峰度 Kurtosis kurtosis | -0.264 |
| 角度范围 angular_range | — – 0.5000 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 40860.0000 |
| 实空间数据点数 n_real_points | 80 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria |
AN1: 0.000;
Oscil: 0.767;
Stabil: 1.000;
Sysdev: 0.256;
Positv: 1.000;
Valcen: 0.896;
Smooth: 0.000
|
Entity 1
polymer
| 描述 description | 5'-R(*GP*GP*UP*GP*(PSU)P*AP*GP*UP*A)-3' |
| 分子量 formula_weight | 2912.8 kDa |
| 来源方法 src_method | nat |
| 拷贝数 entity_count | 1 |
聚合体 Polymer
| 聚合体类型 type | polyribonucleotide |
| 链编号 strand_id | A |
| 原子数 atom_count | 5454 |
GGUGUAGUA
Entity 2
polymer
| 描述 description | 5'-R(*UP*AP*CP*UP*AP*AP*CP*AP*CP*C)-3' |
| 分子量 formula_weight | 3104.9 kDa |
| 来源方法 src_method | nat |
| 拷贝数 entity_count | 1 |
聚合体 Polymer
| 聚合体类型 type | polyribonucleotide |
| 链编号 strand_id | B |
UACUAACACC
Sculpting of the Spliceosomal Branch Site Recognition Motif by a Conserved Pseudouridine
Nat.Struct.Biol. (2002)
Files (7)
- pr_distribution /app/data/pr_computation/lp/1lpw/pr_distribution.json
- pr_output /app/data/pr_computation/lp/1lpw/1lpw.pr.out
- pr_plot /app/data/visualization/pr_computation/lp/1lpw/1lpw_pr_distribution.png
- saxs_curve_dat /app/data/saxs_computation/lp/1lpw/1lpw.dat
- saxs_fit /app/data/saxs_computation/lp/1lpw/1lpw.fit
- saxs_log /app/data/saxs_computation/lp/1lpw/1lpw.log
- saxs_plot /app/data/visualization/saxs_computation/lp/1lpw/1lpw_saxs_profile.png
Curves (3)
| fit |
/app/data/saxs_computation/lp/1lpw/1lpw.fit |
| pddf |
/app/data/pr_computation/lp/1lpw/1lpw.pr.out |
| profile |
/app/data/saxs_computation/lp/1lpw/1lpw.dat |