Escherichia coli
| Assembly | Physical composition | Protein state | Molecular copy count | Associated components | Data consistency |
|---|---|---|---|---|---|
| 1 | Protein monomer | Monomer | Protein 1 | ZINC ION × 1 water × 1 | Consistent with protein count |
| UniProt name | YODA_ECOLI |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain A； PDBConstruct 1–215； UniProt 2–216 |
The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.
| Entry ID entry_id | 1txl |
| Deposition date deposition_date | 2004-07-05 |
| Structure title title | Crystal structure of metal-binding protein yodA from E. coli, Pfam DUF149 |
| Keywords keywords | ;yodA, E.coli, structural genomics, new fold, PSI, Protein Structure Initiative, New York SGX Research Center for Structural Genomics, NYSGXRC, unknown function ;; structural genomics, unknown function |
| Experimental Method method | X-RAY DIFFRACTION |
This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.
Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)
| Rg（Guinier） | 17.71 Å |
| Rg (electron density) | 16.51 Å |
| Total Rg | 17.65 Å |
| Atom count | 1538 |
| Residues | 188 |
| Excluded volume | 27126 ų |
| Maximum q | 0.500 Å⁻¹ |
| Domain ID domain_id | d1txla_ |
| Class class | b — All beta proteins |
| Fold Fold fold | b.60 — Lipocalins |
| Superfamily Superfamily superfamily | b.60.1 — Lipocalins |
| Family Family family | b.60.1.4 — Hypothetical protein YodA |
| Domain ID domain_id | 1txlA00 |
| Class class | 2 — Mainly Beta |
| Architecture architecture | 40 — Beta Barrel |
| Topology topology | 128 — Lipocalin |
| Homologous superfamily homologous superfamily | 20 — Calycin beta-barrel core domain |