1v1h

Adenovirus fibre shaft sequence N-terminally fused to the bacteriophage T4 fibritin foldon trimerisation motif with a short linker

Method: X-RAY DIFFRACTION D_max: 103.5 Å Quality: GOOD

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

下载 Download SAXS (.dat) P(r) (.pr.out) CIF

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1. 结构基本信息 1. Structure Basics

条目编号 entry_id	1v1h
沉积日期 deposition_date	2004-04-16
结构标题 title	Adenovirus fibre shaft sequence N-terminally fused to the bacteriophage T4 fibritin foldon trimerisation motif with a short linker
关键词 keywords	ADENOVIRUS, CHIMERA, FIBER PROTEIN; ADENOVIRUS
实验方法 method	X-RAY DIFFRACTION

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2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier	31.01 Å
回转半径 Rg (电子) rg_electron	30.96 Å
零角强度 I(0) i0	66764000.00
分子量 molecular_weight	64110.0 kDa
排除体积 excluded_volume	80133 Å³
包络体积 envelope_volume	105360 Å³
水化壳体积 shell_volume	29818 Å³
包络直径 envelope_diameter	109.8 Å
壳层 Rg shell_rg	36.31 Å
包络 Rg envelope_rg	30.84 Å
形状 Rg shape_rg	30.97 Å
总 Rg total_rg	31.41 Å
总原子数 total_atoms	4520
残基数 n_residues	610
球谐函数阶数 n_harmonics	20
q 范围 q_range	— – 0.5000 Å⁻¹
数据点数 n_points	101
壳层类型 shell_type	directional
溶剂电子密度 solvent_density	0.3340 e/Å³
壳层衬度 contrast_shell	0.0300 e/Å³
CRYSOL 版本 crysol_version	4.1.3

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3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax	103.5 Å
Rg (实空间) rg_real	31.10 Å
Rg 误差 (实空间) rg_real_error	0.86 Å
I(0) (实空间) i0_real	6.6760e+07
I(0) 误差 (实空间) i0_real_error	9.3340e+05
Rg (倒空间) rg_reciprocal	31.06 Å
I(0) (倒空间) i0_reciprocal	66760000.0000
解质量估计 total_estimate	0.8482
解质量评级 solution_quality	GOOD a GOOD solution
P(r) 峰数 n_peaks	1
主峰位置 r_peak_primary	101.5 Å
偏度 Skewness skewness	0.373
峰度 Kurtosis kurtosis	-0.424
角度范围 angular_range	— – 0.2550 Å⁻¹
当前正则化参数 α current_alpha	0.0000
最高正则化参数 α highest_alpha	13610000.0000
实空间数据点数 n_real_points	52
GNOM 版本 gnom_version	4.1.3
质量判据 quality_criteria	AN1: 0.000; Oscil: 0.884; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.896; Smooth: 0.476

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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合体信息 (2)

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6. 折叠分类 (SCOP + CATH) 21 domains

SCOP 2.08 (12 domains)

结构域编号 domain_id	d1v1ha1
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.83 — Triple beta-spiral
超家族 Superfamily superfamily	b.83.1 — Fibre shaft of virus attachment proteins
家族 Family family	b.83.1.1 — Adenovirus

结构域编号 domain_id	d1v1ha2
类 Class class	h — Coiled coil proteins
折叠类型 Fold fold	h.1 — Parallel coiled-coil
超家族 Superfamily superfamily	h.1.17 — Fibritin
家族 Family family	h.1.17.1 — Fibritin

结构域编号 domain_id	d1v1hb1
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.83 — Triple beta-spiral
超家族 Superfamily superfamily	b.83.1 — Fibre shaft of virus attachment proteins
家族 Family family	b.83.1.1 — Adenovirus

结构域编号 domain_id	d1v1hb2
类 Class class	h — Coiled coil proteins
折叠类型 Fold fold	h.1 — Parallel coiled-coil
超家族 Superfamily superfamily	h.1.17 — Fibritin
家族 Family family	h.1.17.1 — Fibritin

结构域编号 domain_id	d1v1hc1
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.83 — Triple beta-spiral
超家族 Superfamily superfamily	b.83.1 — Fibre shaft of virus attachment proteins
家族 Family family	b.83.1.1 — Adenovirus

结构域编号 domain_id	d1v1hc2
类 Class class	h — Coiled coil proteins
折叠类型 Fold fold	h.1 — Parallel coiled-coil
超家族 Superfamily superfamily	h.1.17 — Fibritin
家族 Family family	h.1.17.1 — Fibritin

结构域编号 domain_id	d1v1hd1
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.83 — Triple beta-spiral
超家族 Superfamily superfamily	b.83.1 — Fibre shaft of virus attachment proteins
家族 Family family	b.83.1.1 — Adenovirus

结构域编号 domain_id	d1v1hd2
类 Class class	h — Coiled coil proteins
折叠类型 Fold fold	h.1 — Parallel coiled-coil
超家族 Superfamily superfamily	h.1.17 — Fibritin
家族 Family family	h.1.17.1 — Fibritin

结构域编号 domain_id	d1v1he1
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.83 — Triple beta-spiral
超家族 Superfamily superfamily	b.83.1 — Fibre shaft of virus attachment proteins
家族 Family family	b.83.1.1 — Adenovirus

结构域编号 domain_id	d1v1he2
类 Class class	h — Coiled coil proteins
折叠类型 Fold fold	h.1 — Parallel coiled-coil
超家族 Superfamily superfamily	h.1.17 — Fibritin
家族 Family family	h.1.17.1 — Fibritin

结构域编号 domain_id	d1v1hf1
类 Class class	b — All beta proteins
折叠类型 Fold fold	b.83 — Triple beta-spiral
超家族 Superfamily superfamily	b.83.1 — Fibre shaft of virus attachment proteins
家族 Family family	b.83.1.1 — Adenovirus

结构域编号 domain_id	d1v1hf2
类 Class class	h — Coiled coil proteins
折叠类型 Fold fold	h.1 — Parallel coiled-coil
超家族 Superfamily superfamily	h.1.17 — Fibritin
家族 Family family	h.1.17.1 — Fibritin

CATH v4.4 (9 domains)

结构域编号 domain_id	1v1hA01
类 Class class	2 — Mainly Beta
架构 Architecture architecture	10 — Ribbon
拓扑 Topology topology	25 — Laminin
同源超家族 H-superfamily homologous superfamily	20 — reovirus attachment protein sigma1; domain 1

结构域编号 domain_id	1v1hA02
类 Class class	6 — Special
架构 Architecture architecture	20 — Other non-globular
拓扑 Topology topology	230 — Wheat Germ Agglutinin (Isolectin 2); domain 1
同源超家族 H-superfamily homologous superfamily	10 —

结构域编号 domain_id	1v1hB00
类 Class class	2 — Mainly Beta
架构 Architecture architecture	10 — Ribbon
拓扑 Topology topology	25 — Laminin
同源超家族 H-superfamily homologous superfamily	20 — reovirus attachment protein sigma1; domain 1

结构域编号 domain_id	1v1hC00
类 Class class	2 — Mainly Beta
架构 Architecture architecture	10 — Ribbon
拓扑 Topology topology	25 — Laminin
同源超家族 H-superfamily homologous superfamily	20 — reovirus attachment protein sigma1; domain 1

结构域编号 domain_id	1v1hD00
类 Class class	2 — Mainly Beta
架构 Architecture architecture	10 — Ribbon
拓扑 Topology topology	25 — Laminin
同源超家族 H-superfamily homologous superfamily	20 — reovirus attachment protein sigma1; domain 1

结构域编号 domain_id	1v1hE01
类 Class class	2 — Mainly Beta
架构 Architecture architecture	10 — Ribbon
拓扑 Topology topology	25 — Laminin
同源超家族 H-superfamily homologous superfamily	20 — reovirus attachment protein sigma1; domain 1

结构域编号 domain_id	1v1hE02
类 Class class	6 — Special
架构 Architecture architecture	20 — Other non-globular
拓扑 Topology topology	230 — Wheat Germ Agglutinin (Isolectin 2); domain 1
同源超家族 H-superfamily homologous superfamily	10 —

结构域编号 domain_id	1v1hF01
类 Class class	2 — Mainly Beta
架构 Architecture architecture	10 — Ribbon
拓扑 Topology topology	25 — Laminin
同源超家族 H-superfamily homologous superfamily	20 — reovirus attachment protein sigma1; domain 1

结构域编号 domain_id	1v1hF02
类 Class class	6 — Special
架构 Architecture architecture	20 — Other non-globular
拓扑 Topology topology	230 — Wheat Germ Agglutinin (Isolectin 2); domain 1
同源超家族 H-superfamily homologous superfamily	10 —

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7. 引用文献 (4)

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晶胞边长 a length_a	77.770 Å
晶胞边长 b length_b	183.330 Å
晶胞边长 c length_c	58.970 Å
晶胞夹角 α angle_alpha	90.00 °
晶胞夹角 β angle_beta	129.29 °
晶胞夹角 γ angle_gamma	90.00 °
晶胞分子数 Z z_pdb	24

空间群 space_group	C 1 2 1
空间群编号 int_tables_number	5
晶系 crystal_system	—

分辨率 resolution	1.900 Å
最低分辨率 resolution_low	20.000 Å
R 因子 r_factor	—
R_work r_work	0.1820
R_free r_free	0.2400

描述 description	FIBRITIN, FIBER PROTEIN
分子量 formula_weight	10793.0 kDa
来源方法 src_method	man
拷贝数 entity_count	6

聚合体类型 type	polypeptide(L)
链编号 strand_id	A,B,C,D,E,F
原子数 atom_count	5033

Adenovirus fibre shaft sequence N-terminally fused to the bacteriophage T4 fibritin foldon trimerisation motif with a short linker

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

1. 结构基本信息 1. Structure Basics

2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

4. 晶体学与实验 4. Crystallography & Experiment

晶胞参数 Unit Cell

对称性 Symmetry

精修参数 Refinement

衍射实验 Diffraction

5. 实体与聚合体信息 (2)

Entity 1 polymer

聚合体 Polymer

来源 Source

Entity 2 water

6. 折叠分类 (SCOP + CATH) 21 domains

SCOP 2.08 (12 domains)

CATH v4.4 (9 domains)

7. 引用文献 (4)

8. 文件与曲线 (10)

Files (7)

Curves (3)

来源生物 organism	BACTERIOPHAGE T4
NCBI 分类编号 ncbi_taxonomy_id	10665
宿主生物 host_organism	ESCHERICHIA COLI

描述 description	water
分子量 formula_weight	18.0 kDa
来源方法 src_method	nat
拷贝数 entity_count	442

fit	/app/data/saxs_computation/v1/1v1h/1v1h.fit
pddf	/app/data/pr_computation/v1/1v1h/1v1h.pr.out
profile	/app/data/saxs_computation/v1/1v1h/1v1h.dat