1w63

AP1 clathrin adaptor core

Method: X-RAY DIFFRACTION Dmax: 221.0 Å Quality: EXCELLENT

SAXS 散射曲线 SAXS Profile

SAXS profile for 1w63

P(r) 距离分布 P(r) Distribution

P(r) distribution for 1w63
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1. 结构基本信息 1. Structure Basics

条目编号 entry_id1w63
沉积日期 deposition_date2004-08-12
结构标题 titleAP1 clathrin adaptor core
关键词 keywordsENDOCYTOSIS, CLATHRIN ADAPTOR, TRANSPORT, COATED PITS; ENDOCYTOSIS
实验方法 methodX-RAY DIFFRACTION

2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier84.19
回转半径 Rg (电子) rg_electron84.16
零角强度 I(0) i017781000000.00
分子量 molecular_weight1165600.0 kDa
排除体积 excluded_volume1472200 ų
包络体积 envelope_volume2315900 ų
水化壳体积 shell_volume230780 ų
包络直径 envelope_diameter305.2
壳层 Rg shell_rg82.67
包络 Rg envelope_rg82.13
形状 Rg shape_rg84.16
总 Rg total_rg84.12
总原子数 total_atoms81744
残基数 n_residues10218
球谐函数阶数 n_harmonics20
q 范围 q_range— – 0.5000 −1
数据点数 n_points101
壳层类型 shell_typedirectional
溶剂电子密度 solvent_density0.3340 e/ų
壳层衬度 contrast_shell0.0300 e/ų
CRYSOL 版本 crysol_version4.1.3

3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax221.0
Rg (实空间) rg_real80.99
Rg 误差 (实空间) rg_real_error0.64
I(0) (实空间) i0_real1.7190e+10
I(0) 误差 (实空间) i0_real_error3.2060e+08
Rg (倒空间) rg_reciprocal83.89
I(0) (倒空间) i0_reciprocal17760000000.0000
解质量估计 total_estimate0.9005
解质量评级 solution_quality EXCELLENT a EXCELLENT solution
P(r) 峰数 n_peaks1
主峰位置 r_peak_primary104.7
偏度 Skewness skewness0.182
峰度 Kurtosis kurtosis-0.603
角度范围 angular_range— – 0.0950 −1
当前正则化参数 α current_alpha0.3328
最高正则化参数 α highest_alpha1379000000.0000
实空间数据点数 n_real_points20
GNOM 版本 gnom_version4.1.3
质量判据 quality_criteria AN1: 0.000; Oscil: 1.000; Stabil: 0.989; Sysdev: 1.000; Positv: 1.000; Valcen: 0.975; Smooth: 0.000

4. 晶体学与实验 4. Crystallography & Experiment

5. 实体与聚合体信息 (4)

6. 折叠分类 (SCOP + CATH) 48 domains

SCOP 2.08 (24 domains)

结构域编号 domain_idd1w63a_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.23 — clathrin assemblies
超家族 Superfamily superfamilyi.23.1 — clathrin assemblies
家族 Family familyi.23.1.1 — clathrin assemblies
结构域编号 domain_idd1w63b_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.23 — clathrin assemblies
超家族 Superfamily superfamilyi.23.1 — clathrin assemblies
家族 Family familyi.23.1.1 — clathrin assemblies
结构域编号 domain_idd1w63c_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.23 — clathrin assemblies
超家族 Superfamily superfamilyi.23.1 — clathrin assemblies
家族 Family familyi.23.1.1 — clathrin assemblies
结构域编号 domain_idd1w63d_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.23 — clathrin assemblies
超家族 Superfamily superfamilyi.23.1 — clathrin assemblies
家族 Family familyi.23.1.1 — clathrin assemblies
结构域编号 domain_idd1w63e_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.23 — clathrin assemblies
超家族 Superfamily superfamilyi.23.1 — clathrin assemblies
家族 Family familyi.23.1.1 — clathrin assemblies
结构域编号 domain_idd1w63f_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.23 — clathrin assemblies
超家族 Superfamily superfamilyi.23.1 — clathrin assemblies
家族 Family familyi.23.1.1 — clathrin assemblies
结构域编号 domain_idd1w63g_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.23 — clathrin assemblies
超家族 Superfamily superfamilyi.23.1 — clathrin assemblies
家族 Family familyi.23.1.1 — clathrin assemblies
结构域编号 domain_idd1w63h_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.23 — clathrin assemblies
超家族 Superfamily superfamilyi.23.1 — clathrin assemblies
家族 Family familyi.23.1.1 — clathrin assemblies
结构域编号 domain_idd1w63i_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.23 — clathrin assemblies
超家族 Superfamily superfamilyi.23.1 — clathrin assemblies
家族 Family familyi.23.1.1 — clathrin assemblies
结构域编号 domain_idd1w63j_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.23 — clathrin assemblies
超家族 Superfamily superfamilyi.23.1 — clathrin assemblies
家族 Family familyi.23.1.1 — clathrin assemblies
结构域编号 domain_idd1w63k_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.23 — clathrin assemblies
超家族 Superfamily superfamilyi.23.1 — clathrin assemblies
家族 Family familyi.23.1.1 — clathrin assemblies
结构域编号 domain_idd1w63l_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.23 — clathrin assemblies
超家族 Superfamily superfamilyi.23.1 — clathrin assemblies
家族 Family familyi.23.1.1 — clathrin assemblies
结构域编号 domain_idd1w63m_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.23 — clathrin assemblies
超家族 Superfamily superfamilyi.23.1 — clathrin assemblies
家族 Family familyi.23.1.1 — clathrin assemblies
结构域编号 domain_idd1w63n_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.23 — clathrin assemblies
超家族 Superfamily superfamilyi.23.1 — clathrin assemblies
家族 Family familyi.23.1.1 — clathrin assemblies
结构域编号 domain_idd1w63o_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.23 — clathrin assemblies
超家族 Superfamily superfamilyi.23.1 — clathrin assemblies
家族 Family familyi.23.1.1 — clathrin assemblies
结构域编号 domain_idd1w63p_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.23 — clathrin assemblies
超家族 Superfamily superfamilyi.23.1 — clathrin assemblies
家族 Family familyi.23.1.1 — clathrin assemblies
结构域编号 domain_idd1w63q_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.23 — clathrin assemblies
超家族 Superfamily superfamilyi.23.1 — clathrin assemblies
家族 Family familyi.23.1.1 — clathrin assemblies
结构域编号 domain_idd1w63r_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.23 — clathrin assemblies
超家族 Superfamily superfamilyi.23.1 — clathrin assemblies
家族 Family familyi.23.1.1 — clathrin assemblies
结构域编号 domain_idd1w63s_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.23 — clathrin assemblies
超家族 Superfamily superfamilyi.23.1 — clathrin assemblies
家族 Family familyi.23.1.1 — clathrin assemblies
结构域编号 domain_idd1w63t_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.23 — clathrin assemblies
超家族 Superfamily superfamilyi.23.1 — clathrin assemblies
家族 Family familyi.23.1.1 — clathrin assemblies
结构域编号 domain_idd1w63u_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.23 — clathrin assemblies
超家族 Superfamily superfamilyi.23.1 — clathrin assemblies
家族 Family familyi.23.1.1 — clathrin assemblies
结构域编号 domain_idd1w63v_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.23 — clathrin assemblies
超家族 Superfamily superfamilyi.23.1 — clathrin assemblies
家族 Family familyi.23.1.1 — clathrin assemblies
结构域编号 domain_idd1w63w_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.23 — clathrin assemblies
超家族 Superfamily superfamilyi.23.1 — clathrin assemblies
家族 Family familyi.23.1.1 — clathrin assemblies
结构域编号 domain_idd1w63x_
类 Class classi — Low resolution protein structures
折叠类型 Fold foldi.23 — clathrin assemblies
超家族 Superfamily superfamilyi.23.1 — clathrin assemblies
家族 Family familyi.23.1.1 — clathrin assemblies

CATH v4.4 (24 domains)

结构域编号 domain_id1w63A00
类 Class class1 — Mainly Alpha
架构 Architecture architecture25 — Alpha Horseshoe
拓扑 Topology topology10 — Leucine-rich Repeat Variant
同源超家族 H-superfamily homologous superfamily10 — Leucine-rich Repeat Variant
结构域编号 domain_id1w63B00
类 Class class1 — Mainly Alpha
架构 Architecture architecture25 — Alpha Horseshoe
拓扑 Topology topology10 — Leucine-rich Repeat Variant
同源超家族 H-superfamily homologous superfamily10 — Leucine-rich Repeat Variant
结构域编号 domain_id1w63C00
类 Class class1 — Mainly Alpha
架构 Architecture architecture25 — Alpha Horseshoe
拓扑 Topology topology10 — Leucine-rich Repeat Variant
同源超家族 H-superfamily homologous superfamily10 — Leucine-rich Repeat Variant
结构域编号 domain_id1w63D00
类 Class class1 — Mainly Alpha
架构 Architecture architecture25 — Alpha Horseshoe
拓扑 Topology topology10 — Leucine-rich Repeat Variant
同源超家族 H-superfamily homologous superfamily10 — Leucine-rich Repeat Variant
结构域编号 domain_id1w63E00
类 Class class1 — Mainly Alpha
架构 Architecture architecture25 — Alpha Horseshoe
拓扑 Topology topology10 — Leucine-rich Repeat Variant
同源超家族 H-superfamily homologous superfamily10 — Leucine-rich Repeat Variant
结构域编号 domain_id1w63F00
类 Class class1 — Mainly Alpha
架构 Architecture architecture25 — Alpha Horseshoe
拓扑 Topology topology10 — Leucine-rich Repeat Variant
同源超家族 H-superfamily homologous superfamily10 — Leucine-rich Repeat Variant
结构域编号 domain_id1w63G00
类 Class class1 — Mainly Alpha
架构 Architecture architecture25 — Alpha Horseshoe
拓扑 Topology topology10 — Leucine-rich Repeat Variant
同源超家族 H-superfamily homologous superfamily10 — Leucine-rich Repeat Variant
结构域编号 domain_id1w63H00
类 Class class1 — Mainly Alpha
架构 Architecture architecture25 — Alpha Horseshoe
拓扑 Topology topology10 — Leucine-rich Repeat Variant
同源超家族 H-superfamily homologous superfamily10 — Leucine-rich Repeat Variant
结构域编号 domain_id1w63I00
类 Class class1 — Mainly Alpha
架构 Architecture architecture25 — Alpha Horseshoe
拓扑 Topology topology10 — Leucine-rich Repeat Variant
同源超家族 H-superfamily homologous superfamily10 — Leucine-rich Repeat Variant
结构域编号 domain_id1w63J00
类 Class class1 — Mainly Alpha
架构 Architecture architecture25 — Alpha Horseshoe
拓扑 Topology topology10 — Leucine-rich Repeat Variant
同源超家族 H-superfamily homologous superfamily10 — Leucine-rich Repeat Variant
结构域编号 domain_id1w63K00
类 Class class1 — Mainly Alpha
架构 Architecture architecture25 — Alpha Horseshoe
拓扑 Topology topology10 — Leucine-rich Repeat Variant
同源超家族 H-superfamily homologous superfamily10 — Leucine-rich Repeat Variant
结构域编号 domain_id1w63L00
类 Class class1 — Mainly Alpha
架构 Architecture architecture25 — Alpha Horseshoe
拓扑 Topology topology10 — Leucine-rich Repeat Variant
同源超家族 H-superfamily homologous superfamily10 — Leucine-rich Repeat Variant
结构域编号 domain_id1w63M01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology450 — Beta-Lactamase
同源超家族 H-superfamily homologous superfamily60
结构域编号 domain_id1w63N01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology450 — Beta-Lactamase
同源超家族 H-superfamily homologous superfamily60
结构域编号 domain_id1w63O01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology450 — Beta-Lactamase
同源超家族 H-superfamily homologous superfamily60
结构域编号 domain_id1w63P01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology450 — Beta-Lactamase
同源超家族 H-superfamily homologous superfamily60
结构域编号 domain_id1w63Q00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology450 — Beta-Lactamase
同源超家族 H-superfamily homologous superfamily60
结构域编号 domain_id1w63R01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology450 — Beta-Lactamase
同源超家族 H-superfamily homologous superfamily60
结构域编号 domain_id1w63S00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology450 — Beta-Lactamase
同源超家族 H-superfamily homologous superfamily60
结构域编号 domain_id1w63T00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology450 — Beta-Lactamase
同源超家族 H-superfamily homologous superfamily60
结构域编号 domain_id1w63U00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology450 — Beta-Lactamase
同源超家族 H-superfamily homologous superfamily60
结构域编号 domain_id1w63V01
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology450 — Beta-Lactamase
同源超家族 H-superfamily homologous superfamily60
结构域编号 domain_id1w63W00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology450 — Beta-Lactamase
同源超家族 H-superfamily homologous superfamily60
结构域编号 domain_id1w63X00
类 Class class3 — Alpha Beta
架构 Architecture architecture30 — 2-Layer Sandwich
拓扑 Topology topology450 — Beta-Lactamase
同源超家族 H-superfamily homologous superfamily60

7. 引用文献 (1)

8. 文件与曲线 (10)