1w63
AP1 clathrin adaptor core
SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 1w63 |
| 沉积日期 deposition_date | 2004-08-12 |
| 结构标题 title | AP1 clathrin adaptor core |
| 关键词 keywords | ENDOCYTOSIS, CLATHRIN ADAPTOR, TRANSPORT, COATED PITS; ENDOCYTOSIS |
| 实验方法 method | X-RAY DIFFRACTION |
2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
| 回转半径 Rg (Guinier) rg_guinier | 84.19 Å |
| 回转半径 Rg (电子) rg_electron | 84.16 Å |
| 零角强度 I(0) i0 | 17781000000.00 |
| 分子量 molecular_weight | 1165600.0 kDa |
| 排除体积 excluded_volume | 1472200 ų |
| 包络体积 envelope_volume | 2315900 ų |
| 水化壳体积 shell_volume | 230780 ų |
| 包络直径 envelope_diameter | 305.2 Å |
| 壳层 Rg shell_rg | 82.67 Å |
| 包络 Rg envelope_rg | 82.13 Å |
| 形状 Rg shape_rg | 84.16 Å |
| 总 Rg total_rg | 84.12 Å |
| 总原子数 total_atoms | 81744 |
| 残基数 n_residues | 10218 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
| 最大尺寸 Dmax dmax | 221.0 Å |
| Rg (实空间) rg_real | 80.99 Å |
| Rg 误差 (实空间) rg_real_error | 0.64 Å |
| I(0) (实空间) i0_real | 1.7190e+10 |
| I(0) 误差 (实空间) i0_real_error | 3.2060e+08 |
| Rg (倒空间) rg_reciprocal | 83.89 Å |
| I(0) (倒空间) i0_reciprocal | 17760000000.0000 |
| 解质量估计 total_estimate | 0.9005 |
| 解质量评级 solution_quality | EXCELLENT a EXCELLENT solution |
| P(r) 峰数 n_peaks | 1 |
| 主峰位置 r_peak_primary | 104.7 Å |
| 偏度 Skewness skewness | 0.182 |
| 峰度 Kurtosis kurtosis | -0.603 |
| 角度范围 angular_range | — – 0.0950 Å−1 |
| 当前正则化参数 α current_alpha | 0.3328 |
| 最高正则化参数 α highest_alpha | 1379000000.0000 |
| 实空间数据点数 n_real_points | 20 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria | AN1: 0.000; Oscil: 1.000; Stabil: 0.989; Sysdev: 1.000; Positv: 1.000; Valcen: 0.975; Smooth: 0.000 |
4. 晶体学与实验 4. Crystallography & Experiment
5. 实体与聚合体信息 (4)
6. 折叠分类 (SCOP + CATH) 48 domains
SCOP 2.08 (24 domains)
| 结构域编号 domain_id | d1w63a_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.23 — clathrin assemblies |
| 超家族 Superfamily superfamily | i.23.1 — clathrin assemblies |
| 家族 Family family | i.23.1.1 — clathrin assemblies |
| 结构域编号 domain_id | d1w63b_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.23 — clathrin assemblies |
| 超家族 Superfamily superfamily | i.23.1 — clathrin assemblies |
| 家族 Family family | i.23.1.1 — clathrin assemblies |
| 结构域编号 domain_id | d1w63c_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.23 — clathrin assemblies |
| 超家族 Superfamily superfamily | i.23.1 — clathrin assemblies |
| 家族 Family family | i.23.1.1 — clathrin assemblies |
| 结构域编号 domain_id | d1w63d_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.23 — clathrin assemblies |
| 超家族 Superfamily superfamily | i.23.1 — clathrin assemblies |
| 家族 Family family | i.23.1.1 — clathrin assemblies |
| 结构域编号 domain_id | d1w63e_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.23 — clathrin assemblies |
| 超家族 Superfamily superfamily | i.23.1 — clathrin assemblies |
| 家族 Family family | i.23.1.1 — clathrin assemblies |
| 结构域编号 domain_id | d1w63f_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.23 — clathrin assemblies |
| 超家族 Superfamily superfamily | i.23.1 — clathrin assemblies |
| 家族 Family family | i.23.1.1 — clathrin assemblies |
| 结构域编号 domain_id | d1w63g_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.23 — clathrin assemblies |
| 超家族 Superfamily superfamily | i.23.1 — clathrin assemblies |
| 家族 Family family | i.23.1.1 — clathrin assemblies |
| 结构域编号 domain_id | d1w63h_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.23 — clathrin assemblies |
| 超家族 Superfamily superfamily | i.23.1 — clathrin assemblies |
| 家族 Family family | i.23.1.1 — clathrin assemblies |
| 结构域编号 domain_id | d1w63i_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.23 — clathrin assemblies |
| 超家族 Superfamily superfamily | i.23.1 — clathrin assemblies |
| 家族 Family family | i.23.1.1 — clathrin assemblies |
| 结构域编号 domain_id | d1w63j_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.23 — clathrin assemblies |
| 超家族 Superfamily superfamily | i.23.1 — clathrin assemblies |
| 家族 Family family | i.23.1.1 — clathrin assemblies |
| 结构域编号 domain_id | d1w63k_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.23 — clathrin assemblies |
| 超家族 Superfamily superfamily | i.23.1 — clathrin assemblies |
| 家族 Family family | i.23.1.1 — clathrin assemblies |
| 结构域编号 domain_id | d1w63l_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.23 — clathrin assemblies |
| 超家族 Superfamily superfamily | i.23.1 — clathrin assemblies |
| 家族 Family family | i.23.1.1 — clathrin assemblies |
| 结构域编号 domain_id | d1w63m_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.23 — clathrin assemblies |
| 超家族 Superfamily superfamily | i.23.1 — clathrin assemblies |
| 家族 Family family | i.23.1.1 — clathrin assemblies |
| 结构域编号 domain_id | d1w63n_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.23 — clathrin assemblies |
| 超家族 Superfamily superfamily | i.23.1 — clathrin assemblies |
| 家族 Family family | i.23.1.1 — clathrin assemblies |
| 结构域编号 domain_id | d1w63o_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.23 — clathrin assemblies |
| 超家族 Superfamily superfamily | i.23.1 — clathrin assemblies |
| 家族 Family family | i.23.1.1 — clathrin assemblies |
| 结构域编号 domain_id | d1w63p_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.23 — clathrin assemblies |
| 超家族 Superfamily superfamily | i.23.1 — clathrin assemblies |
| 家族 Family family | i.23.1.1 — clathrin assemblies |
| 结构域编号 domain_id | d1w63q_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.23 — clathrin assemblies |
| 超家族 Superfamily superfamily | i.23.1 — clathrin assemblies |
| 家族 Family family | i.23.1.1 — clathrin assemblies |
| 结构域编号 domain_id | d1w63r_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.23 — clathrin assemblies |
| 超家族 Superfamily superfamily | i.23.1 — clathrin assemblies |
| 家族 Family family | i.23.1.1 — clathrin assemblies |
| 结构域编号 domain_id | d1w63s_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.23 — clathrin assemblies |
| 超家族 Superfamily superfamily | i.23.1 — clathrin assemblies |
| 家族 Family family | i.23.1.1 — clathrin assemblies |
| 结构域编号 domain_id | d1w63t_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.23 — clathrin assemblies |
| 超家族 Superfamily superfamily | i.23.1 — clathrin assemblies |
| 家族 Family family | i.23.1.1 — clathrin assemblies |
| 结构域编号 domain_id | d1w63u_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.23 — clathrin assemblies |
| 超家族 Superfamily superfamily | i.23.1 — clathrin assemblies |
| 家族 Family family | i.23.1.1 — clathrin assemblies |
| 结构域编号 domain_id | d1w63v_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.23 — clathrin assemblies |
| 超家族 Superfamily superfamily | i.23.1 — clathrin assemblies |
| 家族 Family family | i.23.1.1 — clathrin assemblies |
| 结构域编号 domain_id | d1w63w_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.23 — clathrin assemblies |
| 超家族 Superfamily superfamily | i.23.1 — clathrin assemblies |
| 家族 Family family | i.23.1.1 — clathrin assemblies |
| 结构域编号 domain_id | d1w63x_ |
| 类 Class class | i — Low resolution protein structures |
| 折叠类型 Fold fold | i.23 — clathrin assemblies |
| 超家族 Superfamily superfamily | i.23.1 — clathrin assemblies |
| 家族 Family family | i.23.1.1 — clathrin assemblies |
CATH v4.4 (24 domains)
| 结构域编号 domain_id | 1w63A00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 25 — Alpha Horseshoe |
| 拓扑 Topology topology | 10 — Leucine-rich Repeat Variant |
| 同源超家族 H-superfamily homologous superfamily | 10 — Leucine-rich Repeat Variant |
| 结构域编号 domain_id | 1w63B00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 25 — Alpha Horseshoe |
| 拓扑 Topology topology | 10 — Leucine-rich Repeat Variant |
| 同源超家族 H-superfamily homologous superfamily | 10 — Leucine-rich Repeat Variant |
| 结构域编号 domain_id | 1w63C00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 25 — Alpha Horseshoe |
| 拓扑 Topology topology | 10 — Leucine-rich Repeat Variant |
| 同源超家族 H-superfamily homologous superfamily | 10 — Leucine-rich Repeat Variant |
| 结构域编号 domain_id | 1w63D00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 25 — Alpha Horseshoe |
| 拓扑 Topology topology | 10 — Leucine-rich Repeat Variant |
| 同源超家族 H-superfamily homologous superfamily | 10 — Leucine-rich Repeat Variant |
| 结构域编号 domain_id | 1w63E00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 25 — Alpha Horseshoe |
| 拓扑 Topology topology | 10 — Leucine-rich Repeat Variant |
| 同源超家族 H-superfamily homologous superfamily | 10 — Leucine-rich Repeat Variant |
| 结构域编号 domain_id | 1w63F00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 25 — Alpha Horseshoe |
| 拓扑 Topology topology | 10 — Leucine-rich Repeat Variant |
| 同源超家族 H-superfamily homologous superfamily | 10 — Leucine-rich Repeat Variant |
| 结构域编号 domain_id | 1w63G00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 25 — Alpha Horseshoe |
| 拓扑 Topology topology | 10 — Leucine-rich Repeat Variant |
| 同源超家族 H-superfamily homologous superfamily | 10 — Leucine-rich Repeat Variant |
| 结构域编号 domain_id | 1w63H00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 25 — Alpha Horseshoe |
| 拓扑 Topology topology | 10 — Leucine-rich Repeat Variant |
| 同源超家族 H-superfamily homologous superfamily | 10 — Leucine-rich Repeat Variant |
| 结构域编号 domain_id | 1w63I00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 25 — Alpha Horseshoe |
| 拓扑 Topology topology | 10 — Leucine-rich Repeat Variant |
| 同源超家族 H-superfamily homologous superfamily | 10 — Leucine-rich Repeat Variant |
| 结构域编号 domain_id | 1w63J00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 25 — Alpha Horseshoe |
| 拓扑 Topology topology | 10 — Leucine-rich Repeat Variant |
| 同源超家族 H-superfamily homologous superfamily | 10 — Leucine-rich Repeat Variant |
| 结构域编号 domain_id | 1w63K00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 25 — Alpha Horseshoe |
| 拓扑 Topology topology | 10 — Leucine-rich Repeat Variant |
| 同源超家族 H-superfamily homologous superfamily | 10 — Leucine-rich Repeat Variant |
| 结构域编号 domain_id | 1w63L00 |
| 类 Class class | 1 — Mainly Alpha |
| 架构 Architecture architecture | 25 — Alpha Horseshoe |
| 拓扑 Topology topology | 10 — Leucine-rich Repeat Variant |
| 同源超家族 H-superfamily homologous superfamily | 10 — Leucine-rich Repeat Variant |
| 结构域编号 domain_id | 1w63M01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 450 — Beta-Lactamase |
| 同源超家族 H-superfamily homologous superfamily | 60 — |
| 结构域编号 domain_id | 1w63N01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 450 — Beta-Lactamase |
| 同源超家族 H-superfamily homologous superfamily | 60 — |
| 结构域编号 domain_id | 1w63O01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 450 — Beta-Lactamase |
| 同源超家族 H-superfamily homologous superfamily | 60 — |
| 结构域编号 domain_id | 1w63P01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 450 — Beta-Lactamase |
| 同源超家族 H-superfamily homologous superfamily | 60 — |
| 结构域编号 domain_id | 1w63Q00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 450 — Beta-Lactamase |
| 同源超家族 H-superfamily homologous superfamily | 60 — |
| 结构域编号 domain_id | 1w63R01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 450 — Beta-Lactamase |
| 同源超家族 H-superfamily homologous superfamily | 60 — |
| 结构域编号 domain_id | 1w63S00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 450 — Beta-Lactamase |
| 同源超家族 H-superfamily homologous superfamily | 60 — |
| 结构域编号 domain_id | 1w63T00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 450 — Beta-Lactamase |
| 同源超家族 H-superfamily homologous superfamily | 60 — |
| 结构域编号 domain_id | 1w63U00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 450 — Beta-Lactamase |
| 同源超家族 H-superfamily homologous superfamily | 60 — |
| 结构域编号 domain_id | 1w63V01 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 450 — Beta-Lactamase |
| 同源超家族 H-superfamily homologous superfamily | 60 — |
| 结构域编号 domain_id | 1w63W00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 450 — Beta-Lactamase |
| 同源超家族 H-superfamily homologous superfamily | 60 — |
| 结构域编号 domain_id | 1w63X00 |
| 类 Class class | 3 — Alpha Beta |
| 架构 Architecture architecture | 30 — 2-Layer Sandwich |
| 拓扑 Topology topology | 450 — Beta-Lactamase |
| 同源超家族 H-superfamily homologous superfamily | 60 — |