Localization and dynamic behavior of ribosomal protein L30e

条目编号 entry_id	1ysh
沉积日期 deposition_date	2005-02-08
结构标题 title	Localization and dynamic behavior of ribosomal protein L30e
关键词 keywords	STRUCTURAL PROTEIN, RNA, STRUCTURAL PROTEIN-RNA COMPLEX; STRUCTURAL PROTEIN/RNA
实验方法 method	ELECTRON MICROSCOPY

回转半径 Rg (Guinier) rg_guinier	35.92 Å
回转半径 Rg (电子) rg_electron	34.70 Å
零角强度 I(0) i0	230685000.00
分子量 molecular_weight	82562.0 kDa
排除体积 excluded_volume	86602 ų
包络体积 envelope_volume	140030 ų
水化壳体积 shell_volume	36174 ų
包络直径 envelope_diameter	117.3 Å
壳层 Rg shell_rg	38.15 Å
包络 Rg envelope_rg	34.03 Å
形状 Rg shape_rg	34.60 Å
总 Rg total_rg	35.07 Å
总原子数 total_atoms	5576
残基数 n_residues	424
球谐函数阶数 n_harmonics	20
q 范围 q_range	— – 0.5000 Å−1
数据点数 n_points	101
壳层类型 shell_type	directional
溶剂电子密度 solvent_density	0.3340 e/ų
壳层衬度 contrast_shell	0.0300 e/ų
CRYSOL 版本 crysol_version	4.1.3

最大尺寸 Dmax dmax	118.7 Å
Rg (实空间) rg_real	36.00 Å
Rg 误差 (实空间) rg_real_error	0.85 Å
I(0) (实空间) i0_real	2.3070e+08
I(0) 误差 (实空间) i0_real_error	3.6060e+06
Rg (倒空间) rg_reciprocal	35.96 Å
I(0) (倒空间) i0_reciprocal	230700000.0000
解质量估计 total_estimate	0.8952
解质量评级 solution_quality	GOOD a GOOD solution
P(r) 峰数 n_peaks	2
主峰位置 r_peak_primary	43.1 Å
偏度 Skewness skewness	0.302
峰度 Kurtosis kurtosis	-0.567
角度范围 angular_range	— – 0.2200 Å−1
当前正则化参数 α current_alpha	0.0000
最高正则化参数 α highest_alpha	5851000.0000
实空间数据点数 n_real_points	45
GNOM 版本 gnom_version	4.1.3
质量判据 quality_criteria	AN1: 0.000; Oscil: 0.931; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.938; Smooth: 0.903

对称性 Symmetry

空间群 space_group	P 1
空间群编号 int_tables_number	1
晶系 crystal_system	—

精修参数 Refinement

分辨率 resolution	9.500 Å
最低分辨率 resolution_low	— Å
R 因子 r_factor	—
R_work r_work	—
R_free r_free	—

冷冻电镜 EM 3D

分辨率 resolution	9.50 Å
分辨率测定方法 resolution_method	—
颗粒数 num_particles	21000

Files (7)

• pr_distribution /app/data/pr_computation/ys/1ysh/pr_distribution.json
• pr_output /app/data/pr_computation/ys/1ysh/1ysh.pr.out
• pr_plot /app/data/visualization/pr_computation/ys/1ysh/1ysh_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/ys/1ysh/1ysh.dat
• saxs_fit /app/data/saxs_computation/ys/1ysh/1ysh.fit
• saxs_log /app/data/saxs_computation/ys/1ysh/1ysh.log
• saxs_plot /app/data/visualization/saxs_computation/ys/1ysh/1ysh_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/ys/1ysh/1ysh.fit
pddf	/app/data/pr_computation/ys/1ysh/1ysh.pr.out
profile	/app/data/saxs_computation/ys/1ysh/1ysh.dat