8h2i

Near-atomic structure of five-fold averaged PBCV-1 capsid

Method: ELECTRON MICROSCOPY D_max: 735.6 Å Quality: GOOD

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

下载 Download SAXS (.dat) P(r) (.pr.out) CIF

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1. 结构基本信息 1. Structure Basics

条目编号 entry_id	8h2i
沉积日期 deposition_date	2022-10-06
结构标题 title	Near-atomic structure of five-fold averaged PBCV-1 capsid
关键词 keywords	;giant virus, nucleocytoplasmic large DNA viruses (NCLDVs), viral assembly, Paramecium bursaria chlorella virus 1 (PBCV-1), chlorovirus, major capsid protein, minor capsid protein, VIRUS, VIRAL PROTEIN ;; VIRAL PROTEIN
实验方法 method	ELECTRON MICROSCOPY

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2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier	— Å
回转半径 Rg (电子) rg_electron	348.70 Å
零角强度 I(0) i0	483736000000.00
分子量 molecular_weight	6049800.0 kDa
排除体积 excluded_volume	7589400 Å³
包络体积 envelope_volume	21690000 Å³
水化壳体积 shell_volume	677020 Å³
包络直径 envelope_diameter	1585.0 Å
壳层 Rg shell_rg	172.90 Å
包络 Rg envelope_rg	506.80 Å
形状 Rg shape_rg	348.70 Å
总 Rg total_rg	348.60 Å
总原子数 total_atoms	427569
残基数 n_residues	54641
球谐函数阶数 n_harmonics	20
q 范围 q_range	— – 0.5000 Å⁻¹
数据点数 n_points	101
壳层类型 shell_type	directional
溶剂电子密度 solvent_density	0.3340 e/Å³
壳层衬度 contrast_shell	0.0300 e/Å³
CRYSOL 版本 crysol_version	4.1.3

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3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax	735.6 Å
Rg (实空间) rg_real	133.80 Å
Rg 误差 (实空间) rg_real_error	16.97 Å
I(0) (实空间) i0_real	4.0870e+11
I(0) 误差 (实空间) i0_real_error	1.4550e+10
Rg (倒空间) rg_reciprocal	137.40 Å
I(0) (倒空间) i0_reciprocal	365100000000.0000
解质量估计 total_estimate	0.8167
解质量评级 solution_quality	GOOD a GOOD solution
P(r) 峰数 n_peaks	1
主峰位置 r_peak_primary	183.9 Å
偏度 Skewness skewness	—
峰度 Kurtosis kurtosis	—
角度范围 angular_range	— – 0.0200 Å⁻¹
当前正则化参数 α current_alpha	0.4860
最高正则化参数 α highest_alpha	1626000000.0000
实空间数据点数 n_real_points	5
GNOM 版本 gnom_version	4.1.3
质量判据 quality_criteria	AN1: 21.700; Oscil: 0.683; Stabil: 0.888; Sysdev: 1.000; Positv: 0.963; Valcen: 0.952; Smooth: 0.000

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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合体信息 (26)

Entity 1 polymer

描述 description	Major capsid protein (MCP)
分子量 formula_weight	48199.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	72

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	;aa,ab,ac,ad,ae,af,ag,ah,ai,aj,ak,al,am,an,ao,ap,aq,ar,as,at,au,av,aw,ax,ay,az,aA,aB,aC,aD,aE,aF,aG,aH,aI,aJ,aK,aL,aM,aN,aO,aP,aQ,aR,aS,aT,aU,aV,aW,aX,aY,aZ,ba,bb,bc,bd,be,bf,bg,bh,bi,bj,bk,bl,bm,bn,bo,bp,bq,br,bs,bt ;
原子数 atom_count	427569

MAGGLSQLVAYGAQDVYLTGNPQITFFKTVYRRYTNFAIESIQQTINGSVGFGNKVSTQISRNGDLITDIVVEFVLTKGGNGGTTYYPAEELLQDVELEIGGQRIDKHYNDWFRTYDALFRMNDDRYNYRRMTDWVNNELVGAQKRFYVPLIFFFNQTPGLALPLIALQYHEVKLYFTLASQVQGVNYNGSSAIAGAAQPTMSVWVDYIFLDTQERTRFAQLPHEYLIEQLQFTGSETATPSATTQASQNIRLNFNHPTKYLAWNFNNPTNYGQYTALANIPGACSGAGTAAATVTTPDYGNTGTYNEQLAVLDSAKIQLNGQDRFATRKGSYFNKVQPYQSIGGVTPAGVYLYSFALKPAGRQPSGTCNFSRIDNATLSLTYKTCSIDATSPAAVLGNTETVTANTATLLTALNIYAKNYNVLRIMSGMGGLAYAN

Entity 2 polymer

描述 description	MCPv1
分子量 formula_weight	58136.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	8

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	bu,bv,bw,bx,by,bz,bA,bB

MPGAISQLVSYGAQDVYLTGNPQITFFKAVYRRYTNFAMESIQQTFDGTTDFGKFPTVTISRNGDLAGPIWIEVNLPSLLGYNITPTPAEGNTSNIAAISTVFKDDYNNYWWTYNPGTTPQYSNLIAAFSNVDYKYYANAVTSTYPPTALSNVVYSWPYMITGNTGTRSTVAIPTANLRYVNGIGLALFNSIELELGGQRIDKHYSEWWDIWTELTETAEKIQGYNTMVGRYDPAVYNAGWNISQAQGGTYYVPLKFCYNRNPGLYMPLVALSYHQMKLNFNINNYLNCVKCNYPVTALTSKNGANPLSITNMKLYTDFVFLDAPERIRMSEIQHEYLVTQLQWQGSEPVTAPGDPNGSTNRKITLNFNHPVRELVFVYQAASNYDVDAVTGNNIFDYEIPANPTATPPYAGGGEVFTEVKLIINGSDRFSGRPGAYFRLVQPYEHHVRVPSKSVYVYSFALEDADSRQPNGSANFTRYDSVQLQLTLNENLASGRVQIYAPNFNILRIAAGMGGLAFAN

Entity 3 polymer

描述 description	MCPv2
分子量 formula_weight	55733.9 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	bC

MDPTTRFRGSDVPVHNEDHMVFAKPSEIGLQGRQGFYTNTNVVTNTYNHVYTPPGGHTGGKFTQDIYTTDLLIAAKDEKADKIPLDKRMDGTFSEGTFVQLLSRGPQDVYLTYNPQISLFKRKYKRYTNFAIENFEERFSTVVKFGTRNICQLSKNGDLIGNMCFRVTLPNLGIPGGTWAPTMGYNIFSTIRMRIGDTIVQSHDRVWYDIDDKMFCDSTKIQGLDELIKRNVTLTTDQEWELIIPLKFFCCKRNTGKQQFLPILNMDTNINVYLEFNLLPLNSLVTLPTGSILPDIQSIDASVWVDYIFLDDTEKFRFAQDPCVYLIEQTASMDSLSYATTTSGQTYNKTDVYVDMKELNKPVKYVEIIAYEQGSTSFDYVDIIESATFYLNSDEQFKTRAGEYFSLVQPYQHFKRSDPTSNISTFSFALDAGSFQPNGYLNFAPYVRTRFAFKIQPQTTPHVIRLFAVCLNWVKFESGLVKLLFN

Entity 4 polymer

描述 description	MCPv3
分子量 formula_weight	45115.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	11

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	bD,bF,cX,cZ,dd,df,dj,dk,dl,dp,dr

MSGALNQLVAVGKQDAFITGDNLDNSVWRNVTKKVSNFAMESIENYINVNPGSTTSIVVGRFGDLVRKVTLEITMKKGSTTNPFYPSEQYVKYAHLSIGGQIVYRIDDFPTWTRVHEELFMDPDTRATNQRVNNFRPEDPVGAIRKFYLDIPLFFTDDASKALPLIALQYHEVKLDVLFASPGDIPGIDASYTPTVECYIDYVFLDTPEREWFARNTHMYVIEQLQHYNNVFSVAAVEQTKRLNLPFTMPTRYLIWLLKTGADGVYTTSGYPFENNDSYAAIKSAKLQFNGTDRFSERPGYYFTTVQPQDAFGRSPSAGIYVYSFGLDVTGMTSKGALNFSRMDNATLSITTKAATAATISDVYNQSTTLASAITDFTSIAIYAKSFNVLKIDYGMGGMLFAN

Entity 5 polymer

描述 description	MCPv4
分子量 formula_weight	45034.8 kDa
来源方法 src_method	nat
拷贝数 entity_count	4

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	bE,cY,de,dq

MVSGGVVQLISYGAQDVYISGGPKTIFKSYVKKVNNFAIDSVKIPINGMGNGNPSVLIPRNGDLIKSIRLEITLKKGTGQSFYPAEQLISYLALKIGGNIIQKIDDFSNFCRIRNELFMDPDERHTDYRVNNFSSSDVVGSVKYFFLDLPLFFSKDTSVALPLIALQYHDIELDFRFNDVSTIQGVDASYTPTIEMYIDYVYLEQQERIKLVEKPLFYNIEQCNFYRKDITFPALSSTFKLDIPFNNPSRFLVWYFNTDSFGIYNTSGLYFNSNDAAAPLESAVMLLNGTERFKSREGMYFNCVQPQQALGRSPSSGIYMYAFGEDVANATSKGALDMSRVNELSLQLTTKNATAANVYTVYNPQETLASSTSTYKGITLFSTNWNVLQVRSGLGAVMFDS

Entity 6 polymer

描述 description	P1v1
分子量 formula_weight	57555.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	bG

MDDIETIEKYGRDETYIFLADSAKRDTAAYPTAAEYEVLFNAQFRNVTKFELLEVNIPRTEYLIDSSENTFAYALNQPTNINTWQQEIEGNIRIATITPGDYNLPQLIDEMNNVLQQTANTYGDSVILQVSPVTNPSEISNKIRITASGPFTLLGSTGTIGNTIGFGDPVNTSVASTTGYYSTVPGYSVNYPNGADYVFLSNQGNIGSEAVNEFVGPLPPGDNVSFTPIYTGQTPSQYFIAPSAGVPTTVSAYFVDQATAPPGGFVVNYSIIKVSDSSTIATGSLISTNDDLVPSVSSPSVVSANFIQGQQYYIQFTPGSSGSSAGNCTALWYSFPNLPPVSGAYAAINGTLVFPGQYFCTDVSAGAYGNELTSPGIVNITGARYIKIRCKELEQLIYRDRVGEPTTAGIGIVNLIGYGFERSRYDFSSIPVKAFHPIGKLQKLTFRLERPNGTLYDTNGVDNTMLCALTFKVVPNNAVDKTFDGPGKYPAAPGYSGDYIQLQQKRWGEEARATYPTHKSTYNRCRPRTT

Entity 7 polymer

描述 description	P2
分子量 formula_weight	63888.1 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	bH

MCNTYYKRVKFNLFLYTNSIEMELLAVASIIGYGLFSSQQGRETRPDRNRYAEALGSGQGLDEDYDVKPTDMVRKYRKKAEKRWKKAQVPKESGIITPNMRPSEVMPYFTSGKSMNTNTDYKQRKMELFTGGVLDGHSVSGTYKHKVEAANMFGMTPQGRVTSDGTVGNAPGDTELLKARSVNSHQYNNVLPTEQLRVGPGLGVGPEVAATGGFHQFYRQLPLNINEYKLTQLPGRLVPGGTTTGGKGEIQQIASVNHNPDALVLNYDDRPPEATPNGAILASTQYGKQPRGYAGLRPYEKNYEGIAEADVSALQARYLDQTRGRPRTGDGDTEPIINPNGERDGTGSYVTENMCSMTLESQRGLVNRYITPPGVTGVVQQGGEMRPEFVPETTIREQYEDIYYTGPAGTTVTPTEPMNVVELQPESRHAKRAGQDRAYTPGAGRVNNFAPAAQGAYGLKDHPTYNALQHVVSEPIEQTFLPAAQGDDDRFGTKSNVNNPWGNPASLQIANNQLAANKFNRDVTNTVNLDYDAGQPMKQQNFQPKAWIPNNTDDMKMLPLWKRKQLQAQKNKQQRK

Entity 8 polymer

描述 description	P3
分子量 formula_weight	19116.7 kDa
来源方法 src_method	nat
拷贝数 entity_count	3

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	bI,bJ,bK

MAMKTQRKENVLFQNVKPREIPLVDNPFSTYPYKHVITETQPTQAKNQAIWGLVQMGLSGEAAAMYGDVVVQKTTRACRKSEGGFKDVNTELWGTSPYLGRGDGEVYNMPASNQLLRGFESSLRGSRVRTQIDDKSFIPYTWQMIDVPLAAAKTSFIAGLDTRQQLAYGNP

Entity 9 polymer

描述 description	P4
分子量 formula_weight	20637.3 kDa
来源方法 src_method	nat
拷贝数 entity_count	4

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	bL,bM,bN,bO

MFSAFRDTASIGFSDTHQDEKTLRFLKKQISQFIKHLKEYYPNNELTKKLVMKYSDVQLLPYTKGATKDTYTSGLFDHTTGVIKIAPRDGLGNVRDEQSLNKSICHELAHGTRVKYPGESSHSDEWKDAWKTFLKIAADELGWKIEVPCSSVSFYGLTKDDCENCVWDQDPETCPKTAKLA

Entity 10 polymer

描述 description	P5
分子量 formula_weight	16455.8 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	bP

MDSRLSAAYAIRAARISMIPGGVDGLVINYAEGGEPAWVQYPLKKQKPLPNNLCYTPTLEDIARKREAVIAKYTKQPLETGTTFTHVLNASHLNEQYTRVKKSALPDKEFPIIETEKYPEPPILWETTIGAPSRLFDRSDGVKYVR

Entity 11 polymer

描述 description	P6
分子量 formula_weight	24036.7 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	bQ

MILVGIAVLILLAVFAILYYKQKEKFVVVGKFVEPIPSNPGQDFTLLPMDQTYTFADPVPDTATAFDVVLSRFTDKKAPADLLKGATFPEAAPYTDSEVENISKLALSRVKGPDAPVLSFISVEYAAKGVDNKKNTHYDIAFMVYDQVKNFSLKLVLVAVLDAKNKLWIKKFSSFNSFTPKDKGPKGVENIDETPLAEFIPDFVQFSRLYKDNANV

Entity 12 polymer

描述 description	P8
分子量 formula_weight	19226.9 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	bR

METIGNFIQNMAFPTENPYKLSGDFGNSTLEPTVTAALRILHESPAPFNTEFFSRKNVDFIQKKLISETKRYTSFDIGPQNEDELIMMMAGIYVQDSTFDGNIKAGLRKLNTLVITECLKQILPGVRAYALYVRDASLPFSGGGEEAFKRPELATLKGSKVLSGFLPLDRNAS

Entity 13 polymer

描述 description	P9
分子量 formula_weight	23407.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	bS

MKTETLYQDPVWFQDLSVIFKRPSEIIPTRDQSDSERINAMVRLVLYCSFAVALIRQNYLYAILGLAIIAIISLAYALGAKKTKSNEAYGNIRPYSVKRSKKSCSKSSANNPFSNATVGALLDNEARPPACSYDDNDMASTMRKNFNKGLFRNLDDVYEVENSQRQFYTMPVTTAAPDLTAFGQFLYGSKGKTCKEDPSACTPAFATRDG

Entity 14 polymer

描述 description	P11
分子量 formula_weight	23322.7 kDa
来源方法 src_method	nat
拷贝数 entity_count	12

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	bT,bU,bV,bW,bX,bY,bZ,ca,cb,cc,cd,ce

MDMHMIVKVVAILAVLFLVYKLWESMNKPNASPLKIQNPYEKYMNSAEGGEYDAEDDDIYYPETDAEDDDIYTGETDDMYDGEDDDIYVQEGDDIEDAEDEPYDDSADMEQDVPKVQQPMMPLLTPSSQLLPKPSPEAADFAQFAPKNLQAQNFLTATQWIGVNTQGSSLKNANYDLRADPIIPKADVGPWMMSSVDPNIYQKPLFG

Entity 15 polymer

描述 description	P12
分子量 formula_weight	17715.5 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	cf

MGNGPPMERAVSSDDILTYYNTFIFFIYFNFTNENIYIIYTIYMKVQNTIVYIVLLLIVVVIIWNFTRKEGWSDYNAPNDFMKIYYSNIVEDKKLAEKYPFFGTGPFTGLRCRKPNNVGCNTTWVSGQLVELTPKLKEQIECKFGIQYVKT

Entity 16 polymer

描述 description	P13
分子量 formula_weight	11070.8 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	cg

MHKITPFLIAAVVAVIVLAVWLFKKDNKKETWFSRDLNYGKANSKIWNATVAKGLKGIANENAEIRKMYPYLGYGDFTGAICKGPNNQGCTYYANYTR

Entity 17 polymer

描述 description	P15
分子量 formula_weight	18627.4 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	ch

MWLFFFALAVIYMIYKRDVFKKIAVNLKMNGVSIPFVDKYSKQYPTYTKNALFHVTRFNNAYQKTFEYKNISIDTINNLFSIRDDVLYNISEIKLRLPNDLTQEKEINYMYEKTDQRLMEYITDVKSRFHINIYPGTMSSAFEARNYRASNDIVF

Entity 18 polymer

描述 description	P16
分子量 formula_weight	9844.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	ci

MQGGLFGTIKLMIMLFSYFAAYQLGKMQERPQSQWPKAKAGQNKYMVGDWAAWKPIYMGVLGVAVLLTLLGPGGVGGGMGGMFGGGGGYGGYY

Entity 19 polymer

描述 description	P17
分子量 formula_weight	9122.4 kDa
来源方法 src_method	nat
拷贝数 entity_count	4

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	cj,ck,cl,cm

MGAFTSFVLMLLFTGIILIATNELTYNRPREIQYRYLPRDLDSFIRTQEMPSAIFSSMWDVDTRRGGDGGPNPPGIRQSN

Entity 20 polymer

描述 description	P18
分子量 formula_weight	16497.8 kDa
来源方法 src_method	nat
拷贝数 entity_count	2

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	cn,co

MTTITYDTDLLPPPELKVPSLDQALAPESVKNDDPFLDLSYFPVPKGFDNVGSLELNNLSTAEDVATLQNQLNKLAEEKHKRSTWKGLTFRIAVQDMWEALTGIPTDIYQNSGRVSLKELLTRDDRLRGLGLIFFLVAVVSIFFLAAG

Entity 21 polymer

描述 description	P19
分子量 formula_weight	43094.4 kDa
来源方法 src_method	nat
拷贝数 entity_count	25

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	cp,cq,cr,cs,ct,cu,cv,cw,cx,cy,cz,cA,cB,cC,cD,cE,cF,cG,cH,cI,cJ,cK,cL,cM,cN

MFLYYKMNEVLNVNNGSSINVIKILKTPGPDIIRPGKTYKKKDVFTPKFFKNGNVMYTCNTFSLNVPVNNSIATIDFAEHVNGAVFKIEYNRVNFIAPSLYPISGLGTAVVFDLQKGEKASQRKITEFGNKDIRIADEISDIAADDHSVLITTKLMSESTPGELSRDVVLNGEIATGRINMNTGFVSDIIHTKKISIIDDGIVDYYVKINVPAKYSHGIVEVVSGTFLNDIMIHLVRNKNKWALMDSKMYIVNNTNGFVIAKNPDTAMGVSLLEWPRGAVVFPPYYNFKKFKNVNKWSISQQIASCVNTSVKIPGGEYSWKIRLFFGPIWQVQESINSVKTVPHGNDYMYLYKEEIVKYKYQRNTKRNFHEYDYDYKF

Entity 22 polymer

描述 description	P20
分子量 formula_weight	137671.3 kDa
来源方法 src_method	nat
拷贝数 entity_count	8

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	cO,cQ,da,dc,dg,di,ds,du

MSGYSNPLNDPIMIRTMIVYGNLSATYFTGNGAALTQQPIASNVPPTLRADAFGNVTSPANVISGNITTIDVISAGNINTRYVFGDGSTLSGISTGNSVVGVQKIDIIGNAVSSTISTGSLRTNVAFTNITANISNISYLSGNTVSNIINASNLIANIVNANVMSGDITLNRIVATDTRTINLFGNVSTNSFTAYGNVTANILTATTLTANSLQIESVSGNSVQKMIVGNLIGNVLTARTATFDTANIPTITSNVGIFTVANIRTITGDVRANVLNVSNIVTRSIGTDVVSNNIIATIGNVQSMIIGNLSANTLSVSNGTFQNFTTTVGLNVTTLSASVSNALVLSFTTGNSSSTTTTNLDAYGNTQFLRISTETSGINILNANSVSVGNLTIVGNVTSTSNNISGQVTSNSSQVQNINTNVIYSGNVFTSRFIAANANIRSLTASIGQVNSLTITSGNLTSLSFVNGNGNGVIATNANISNLNAVSMSGFAFDANVIIGDITANILSSGNLNANVFEANMLTSGNVVSTNGDTGTINANSIVLNVISGGDTRIDRLIANSVTTGDFYTTSTITAGVIDCAQGKISGNSSSNASLISNVISANTASFVNTSVGYGNLVNAVVIGNIIANVVTSGDANAVFLNSNLTTSGSIFGNISNSASIVAEYSNIRTMNVGNINSTTFNAEYLYVGNITVTGVSNTGYLICRNATFSLNSNIQTLITENVTTSNAGSNIFTNVITTGNAFSQNINTINANVLGITSVFSNVITNISNIRTLILLSNVSLGNLTATSANVTSNVSVGNLIGNIVASNAFFNTATIRNLAIFDVTGNILVAQSNASISNLTTERILLSDANIANLSTSNVSSNIAVVTGTCRIDAINSSNITFTNTATVSAAVVNVLGNLTVSNVINVQNLTANVGNIWQAVSNIQSMTTANIFTNTMTIINSFTYSNISSQRLIATNTLTANGVNLFSNIANLTVSGNANVGRWIAASAPATGALCFSSTESANLTTANLFAGNLNTWRAFVGNVIGNVMTTVAGDFGGIRVSVANIDVSGVANVENFTVNGNLFATNVITRDLSANLINFSGSLSNTSSISISGNSLFTSSANAANVGVSINMITQNLFGNRLSSENIQGNVLQASNIAVSQTVNVVGNISIGNLSVSRELFANSITISSGGTIVGNNTTRMITTPTSNSWSVGSLVGNANVSVQFTANTMVVQNIQPNTLVVNINQSTPTSNSGVRAIYIGYIVPVNFNATSSTTVSFSPALPTNCIYMPQLQYYSGGTVLQNNASFSTQIGLGVETITNTSCTIRMSTLDTLPIPSTSFFGLMVTAVQTV

Entity 23 polymer

描述 description	P21
分子量 formula_weight	141414.2 kDa
来源方法 src_method	nat
拷贝数 entity_count	4

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	cP,db,dh,dt

MSWFDPNWNPFFNRSIIVSGNLVVAGGVIEGNGGGLTNSAFSNPDTIRTDLTGNVTSNGTVRSSLIQTNSIVASGDAYANVWNGNAAFITGISANTTLVGNVRISISGNLTGNFAVSTTTVSNTMTANVLIGTTLTVNNLSATRANVQVLTGNVTGNVRLIANVVNVAAYTVGNLTTSSNVSTTNLNVTSNINGNVRSSTANVQGRLSATTPTTGSIISSSFIANSFTSSGNVQIGDFFGNVRASVGTFDMIASNVFSNVANIIEIRSDIISNIANVGNGTFVFVNASNITTTNITGNITSNVASFSNVDSIFGNVGNLRANTLTVTYANITGTLASGNVAVGNLISADNTSEFANITSFTTNGLVVNGNIIAAIGNGNVFLANVITANSLTLQSSSSTAASNVTTTRWIQSTTSTSNVMTIGNITSGNVISSNAAYFANVISNTITVMSAMTVSGNVSFGNVSFGNVSYGNITANVTTSTGNVSVDNLTSNVVNVVFCNASSVTANTLTSIALTGNTYVYSANTGVLTANVGNVFGTLTVGVANVTSMVSNALFANTAVVSNLSVSNLTVTISSDISNISITGNTSGNVFAANIATIGTLNTANVVANLVASNVMNAWVTSNIRTLITGNANVSTTTSNVITTGGFTITGNITSGLLTSNVIAGNITMYNTSNTTLFTSNTSNIANFFAGNMTAVNTIVSNLEIQGNSVVITQTTPFKVTSVLLANVLFANTIISNTFTTTANVVGNISTDIANIGIANVNFLNTTDFAVNTANIVNYTPTSNINVTGNLTLGNANIVNFYATSANIVGNITANNAVITFLTTPFYKGSGTVSAGFTSIISANALSNVIVFGNLSANIVVSNTLLSNSINVATVFSNVVNIGQVTSTGTTLVNSINFNISNVDVSGNVLVTRDVYTTNISVTTANIANVTFFSNVAIGNLISTRNLTAANLISSSDLFNSGPYTSSQNVTIDTLNFTAGNLGTVAARTTITTPTLFATDVNFTQDALVAGELITQNFYGNITSANIGSRITIGNANVTQTNITGNVVIPRTSNAAGFNSRLLISNNTTVTSNIVANSLISTGNIITNLLQTTGQVSFASLAVEYIDVANLAVRNVVTIGGNLTVSNVANLFSITANTVNMSTVTTNTLSANTITGTSNVLVAGNIIGNCFGNVLVNRGVVTGNVFADTITVPLNAVGVLTGNALIVPNTALHSVAITGSSAFTSNIRTLNTPNAFIWNTSVPSSGLLDARRLRFSQYITSNRIVEMRYFYITNALPQKYDSGGLNARYDLSFGTTLPTSQGQTWHHFLNTLYIGAQYNTNFSINCLIINATTTGLEVIIYNPFGIAASLSSSTPELYFYITSIATSTQ

Entity 24 polymer

描述 description	MCPv5
分子量 formula_weight	45585.5 kDa
来源方法 src_method	nat
拷贝数 entity_count	3

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	cR,cS,cT

MGGIMQLVSTGYQDVFLTGDPTRSLWKRIMARKTNFAIESIETVFDVLYGSTSFINIKKAGDLLKSCVLEITMKRTSTESFYPAEQFIKSLTLLIGDQEVEKIQDFPTWSRVHDELFNDTEMRSANYRMLNFRPDDPPGAIRTFYLDLPLFFTRYLSNSLPLVALQYHEVKLKIDFEPPYNIPGIDSTYMPQVRFYGDYVFLDKPERVYFAQTEHEYIIEQLQTFVTIPNMSNSVNTTMVDLPFTLPSRYIIWVYKTNLHGQYTTSNSTFVTNEGYAPLQSAVIKCNGTDRFSERPGGYFNMVQTTQALGQAPSCGIYMYSFGVNADKQDPEGTLNFSKLDMVTLSYTNKAATAADISQVFDLSTTLENGITKFKNITIFSKNFNVLRIVEGQGGILFSN

Entity 25 polymer

描述 description	P22
分子量 formula_weight	137927.8 kDa
来源方法 src_method	nat
拷贝数 entity_count	3

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	cU,cV,cW

MGSYFVPPANYFFKDIFASNVGNIANVIFDNGNVIAAGGLGYLIGNGAFITGVTSTAIANIPAVVTADIRGNLIGNYANVNNIIASSGNISNVRFVSGGNVTASYYFGDGSQLTGITATANIPSIVTADIRGNIIGNYANVSNVSATFGNIANVLFNNGNVTAAGGNGFFIGNGSLLTGITATANIPSIVTADIRGNIIGNYANVSNVSATFGNIANVLFNNGNVTAAGGNGYFFGNGALLTGITATANIPSIVTADIRGNIIGNYANVSNVSATFGNIANVLFNNGNVTAAGGNGYFFGNGALLTGITATANIPSIVTADIRGNIIGNYANVSNVSATFGNIANVLFNNGNVTAAGGNGFFIGNGSLLSGITATANIPSIVTADIRGNIIGNYANVSNVTATFGNIANVLFNNGNVTAAGGNGYFFGNGSQLTGVTATLPSIVTADIRGNIIGNYANVSNVIATFGNIANVLFNNGNVTAADGNGYFFGNGSQLTGVTATLPSIVTADIRGNIIGNYANVSNVIATFGNIANVLFNNGNVTAAGGNGYFFGNGALLTGITATANIPSIVTADIRGNIIGNYANVSNVIATFGNIANVLFNNGNVTAADGNGYFFGNGSQLTGVTATLPSIVTADIRGNIIGNYANVSNVIATFGNIANVLFNNGNVTAAGGNGYFFGNGALLTGITATANIPSIVTADIRGNIIGNYANVSNVTATFGNIANVLFNNGNVTAAGGNGYFFGNGSQLTGVTATLPSIVTADIRGNIIGNYANVSNVIATFGNIANVLFNNGNVTAAGGNGYFFGNGALLTGITATANIPSIVTADIRGNIIGNYANVSNVTATFGNIGNVLFNNGNVTAAGGNGYFFGNGTFLNFSTITADIRGNIIGNYANVGNVIAGNVSTTLGNIGNVLFNNGNVTAAGGNGYFFGNGTSLTFSTIRADIRGNIIGNYANVANVIAGNVNSTFGNIAGVTFDAGNVSSPVDILVSGNVSVGSDGLFRGPTNQSNNALILRGIGGTNTVNLFSIGAPSGQMRFSVPASGVAFYNFLYGTNQVASLGPQGFYSLSYDSSVVVGQVVSNSTTYSGTIFKTEANRNSSTAFNHISCTGSNGNVFRVRGDGTTYGVGAFQTSGADYAEMMEWEDKNPTFEDRRGYPVVLSGNGKIRIASLSDDYNNIIGVVSSNPSMLADMAWDQWEGKYLKDKFGMRLSNTIYYLANISNENEFTRVGPMTTPPQGYFIKTSPEYILNPKYNPNVAYVERNDRPEWDPVGFVGKLRVRNGCLVHPSWKPLKVIDDYADVGNAAAQVTEYLIGVTPNYTLSKKVEDLEQTINVLKTQVQMLLGNI

Entity 26 polymer

描述 description	P23
分子量 formula_weight	140121.7 kDa
来源方法 src_method	nat
拷贝数 entity_count	3

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	dm,dn,do

MASGWSDFRADPVIVNQDVVVFGNVFVDYLIGNASEMTGAADFVPGNVVNVNIIGNTVSTFVKSDVLMGDTITIDGNITATRLYGDASNMSGLPTLPPNANIDMVGNIVANTNTNKFVSVDTFTGDVTTNVATISNANVGTVTTNTTFFGNVITNVFNIGNLILTSSNVDTLNVTSLVASNVVSSQVDVQATIANSDLNVTRFDATSISAEIFVSSETLAVSNITNLIANIANIQGTTTVTGNLVGNIANVNTLTGNVTGNLFFTNLIIGNITANIFNTTTANVSNLITSNVSASNVSASNVTSTLFTIGNLNTNVATISNLFVTGTTIAGNTTFSSFSVSSLVANISGNNASIPTFTPNVLSTSNITIDGNAVVTGNAGFRTLNVTSLTANVLTTRGDVSNLYTDVINVNTNVFISSANILANNVITVQMNNISNVNITGNAEAFDVSANSVLMSTLSVGGILSLGNVNTNDISFGNIVTGNFFANFANVGNVQGNANVITMYSTTLTSNSAQIGNISGFSIVSNLGNAVSMFVGNLNTGTLVANNSTVGNITYISGNIGNANAQTVRVSGLLSASGVALTFNSITSNVAGNSLTVHGNLRTNSVTTEILTGNVGNLSILNTGNLFANSISVGQSFVISNFANAFIISSQTTNASVITANISGNIRVTNTLEANVVNSDSANIIIKNVSTSGNVSNTFTTGNLTVTNAVFRSGITGNNIEVVGNVNCDGNTTVTTLSYGNLITSVYNTRNIFGNITANTVNITNSNIGNVVTSNINANSLIITNLIPTVDITANVLRASQVNTGWFYGNATCNVLSMSNSVSINTLLSAEVFTSETINANANVSVATINSLGNTVAISRPSFLGNANIRLVISNVITIGNLTANTLVGDSFTATGIVNAINSNSQSDSIATNVTGNIIIRGNLILASSASAQSNASVFNPTNLISLNANSLSSLTATNVSANNVVISNTWQVSNLIVSNISAPNVTANSFQAISMTGRYYRPGISIERAGNLIVSNSLTSTANILQVLTSNTGQVNITNTMFGNISMSNIIVTGVVVTGNLTMGNVIANAVTTSVSTITGNATFGNLTVTDAVIIRGNITANNISTGSYIYGNGAFITGNLTSSGNANISIATRMFGTNSAINVAGTFTGVGNTNTTNATIANLTTNTLLSIGNLSTTGNFTVNSLSVGNLFANGSTIQLSNLANIQVSNLIYSGNVVVSNLSANTLSYVQNIGTSTQLQSGTMNVNNILSAGRFRLSISSTAPVFAGWTMGRVSLSGQSLRTNSGNPRTITFTTPLPAGYSYGIQLSVYSTVFGQTMALFNITVVSLTNTSVQFYIWNNPGGSGDSNTYIGYFAYAY

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7. 引用文献 (1)

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晶胞边长 a length_a	1.000 Å
晶胞边长 b length_b	1.000 Å
晶胞边长 c length_c	1.000 Å
晶胞夹角 α angle_alpha	90.00 °
晶胞夹角 β angle_beta	90.00 °
晶胞夹角 γ angle_gamma	90.00 °
晶胞分子数 Z z_pdb	—

空间群 space_group	P 1
空间群编号 int_tables_number	1
晶系 crystal_system	—

分辨率 resolution	3.80 Å
分辨率测定方法 resolution_method	—
颗粒数 num_particles	56500

fit	/app/data/saxs_computation/h2/8h2i/8h2i.fit
pddf	/app/data/pr_computation/h2/8h2i/8h2i.pr.out
profile	/app/data/saxs_computation/h2/8h2i/8h2i.dat

Near-atomic structure of five-fold averaged PBCV-1 capsid

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

1. 结构基本信息 1. Structure Basics

2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

4. 晶体学与实验 4. Crystallography & Experiment

晶胞参数 Unit Cell

对称性 Symmetry

冷冻电镜 EM 3D

5. 实体与聚合体信息 (26)

Entity 1 polymer

聚合体 Polymer

Entity 2 polymer

聚合体 Polymer

Entity 3 polymer

聚合体 Polymer

Entity 4 polymer

聚合体 Polymer

Entity 5 polymer

聚合体 Polymer

Entity 6 polymer

聚合体 Polymer

Entity 7 polymer

聚合体 Polymer

Entity 8 polymer

聚合体 Polymer

Entity 9 polymer

聚合体 Polymer

Entity 10 polymer

聚合体 Polymer

Entity 11 polymer

聚合体 Polymer

Entity 12 polymer

聚合体 Polymer

Entity 13 polymer

聚合体 Polymer

Entity 14 polymer

聚合体 Polymer

Entity 15 polymer

聚合体 Polymer

Entity 16 polymer

聚合体 Polymer

Entity 17 polymer

聚合体 Polymer

Entity 18 polymer

聚合体 Polymer

Entity 19 polymer

聚合体 Polymer

Entity 20 polymer

聚合体 Polymer

Entity 21 polymer

聚合体 Polymer

Entity 22 polymer

聚合体 Polymer

Entity 23 polymer

聚合体 Polymer

Entity 24 polymer

聚合体 Polymer

Entity 25 polymer

聚合体 Polymer

Entity 26 polymer

聚合体 Polymer

7. 引用文献 (1)

8. 文件与曲线 (10)

Files (7)

Curves (3)