SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
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| 条目编号 entry_id | 8il1 |
| 沉积日期 deposition_date | 2023-03-01 |
| 结构标题 title | Free Thanatin IM14 |
| 关键词 keywords | CYANA 2.1, PEPTIDE BINDING PROTEIN, ANTIMICROBIAL PROTEIN; ANTIMICROBIAL PROTEIN |
| 实验方法 method | SOLUTION NMR |
| 回转半径 Rg (Guinier) rg_guinier | 7.17 Å |
| 回转半径 Rg (电子) rg_electron | 7.51 Å |
| 零角强度 I(0) i0 | 21436500.00 |
| 分子量 molecular_weight | 34583.0 kDa |
| 排除体积 excluded_volume | 42178 ų |
| 包络体积 envelope_volume | 5643 ų |
| 水化壳体积 shell_volume | 5715 ų |
| 包络直径 envelope_diameter | 30.0 Å |
| 壳层 Rg shell_rg | 13.85 Å |
| 包络 Rg envelope_rg | 9.42 Å |
| 形状 Rg shape_rg | 7.45 Å |
| 总 Rg total_rg | 8.05 Å |
| 总原子数 total_atoms | 4840 |
| 残基数 n_residues | 280 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
| 最大尺寸 Dmax dmax | 27.6 Å |
| Rg (实空间) rg_real | 7.24 Å |
| Rg 误差 (实空间) rg_real_error | 0.32 Å |
| I(0) (实空间) i0_real | 2.1440e+07 |
| I(0) 误差 (实空间) i0_real_error | 2.0490e+05 |
| Rg (倒空间) rg_reciprocal | 7.24 Å |
| I(0) (倒空间) i0_reciprocal | 21440000.0000 |
| 解质量估计 total_estimate | 0.7853 |
| 解质量评级 solution_quality |
GOOD
a GOOD solution
|
| P(r) 峰数 n_peaks | 1 |
| 主峰位置 r_peak_primary | 26.9 Å |
| 偏度 Skewness skewness | 0.594 |
| 峰度 Kurtosis kurtosis | 0.228 |
| 角度范围 angular_range | — – 0.5000 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 2320.0000 |
| 实空间数据点数 n_real_points | 80 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria |
AN1: 0.000;
Oscil: 0.619;
Stabil: 1.000;
Sysdev: 1.000;
Positv: 1.000;
Valcen: 0.503;
Smooth: 0.846
|
Entity 1
polymer
| 描述 description | Free IM14 |
| 分子量 formula_weight | 1746.1 kDa |
| 来源方法 src_method | syn |
| 拷贝数 entity_count | 1 |
聚合体 Polymer
| 聚合体类型 type | polypeptide(L) |
| 链编号 strand_id | A |
| 原子数 atom_count | 4840 |
IIYCNRRTGKCQRM
Free Thanatin IM14
To Be Published
PRIMARY
Files (7)
- pr_distribution /app/data/pr_computation/il/8il1/pr_distribution.json
- pr_output /app/data/pr_computation/il/8il1/8il1.pr.out
- pr_plot /app/data/visualization/pr_computation/il/8il1/8il1_pr_distribution.png
- saxs_curve_dat /app/data/saxs_computation/il/8il1/8il1.dat
- saxs_fit /app/data/saxs_computation/il/8il1/8il1.fit
- saxs_log /app/data/saxs_computation/il/8il1/8il1.log
- saxs_plot /app/data/visualization/saxs_computation/il/8il1/8il1_saxs_profile.png
Curves (3)
| fit |
/app/data/saxs_computation/il/8il1/8il1.fit |
| pddf |
/app/data/pr_computation/il/8il1/8il1.pr.out |
| profile |
/app/data/saxs_computation/il/8il1/8il1.dat |