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8pbz

Sub-tomogram average of the Nap adhesion complex from the human pathogen Mycoplasma genitalium at 11 Angstrom.

Method: ELECTRON MICROSCOPY Dmax: 214.5 Å Quality: GOOD

SAXS 散射曲线 SAXS Profile

SAXS profile for 8pbz

P(r) 距离分布 P(r) Distribution

P(r) distribution for 8pbz
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1. 结构基本信息 1. Structure Basics

条目编号 entry_id8pbz
沉积日期 deposition_date2023-06-09
结构标题 titleSub-tomogram average of the Nap adhesion complex from the human pathogen Mycoplasma genitalium at 11 Angstrom.
关键词 keywordsAdhesion, Mycoplasma genitalium, CELL ADHESION; CELL ADHESION
实验方法 methodELECTRON MICROSCOPY
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2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier58.79 Å
回转半径 Rg (电子) rg_electron60.16 Å
零角强度 I(0) i03846470000.00
分子量 molecular_weight523800.0 kDa
排除体积 excluded_volume655980 ų
包络体积 envelope_volume954550 ų
水化壳体积 shell_volume135450 ų
包络直径 envelope_diameter252.0 Å
壳层 Rg shell_rg62.07 Å
包络 Rg envelope_rg63.44 Å
形状 Rg shape_rg60.04 Å
总 Rg total_rg60.64 Å
总原子数 total_atoms73330
残基数 n_residues4766
球谐函数阶数 n_harmonics20
q 范围 q_range— – 0.5000 Å−1
数据点数 n_points101
壳层类型 shell_typedirectional
溶剂电子密度 solvent_density0.3340 e/ų
壳层衬度 contrast_shell0.0300 e/ų
CRYSOL 版本 crysol_version4.1.3
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3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax214.5 Å
Rg (实空间) rg_real59.14 Å
Rg 误差 (实空间) rg_real_error1.90 Å
I(0) (实空间) i0_real3.8360e+09
I(0) 误差 (实空间) i0_real_error7.5400e+07
Rg (倒空间) rg_reciprocal58.10 Å
I(0) (倒空间) i0_reciprocal3837000000.0000
解质量估计 total_estimate0.7649
解质量评级 solution_quality GOOD a GOOD solution
P(r) 峰数 n_peaks2
主峰位置 r_peak_primary71.5 Å
偏度 Skewness skewness0.966
峰度 Kurtosis kurtosis1.261
角度范围 angular_range— – 0.1350 Å−1
当前正则化参数 α current_alpha0.0237
最高正则化参数 α highest_alpha712100000.0000
实空间数据点数 n_real_points28
GNOM 版本 gnom_version4.1.3
质量判据 quality_criteria AN1: 0.000; Oscil: 0.420; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.975; Smooth: 0.700
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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合体信息 (3)

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7. 引用文献 (1)

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8. 文件与曲线 (10)