SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
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| 条目编号 entry_id | 8qaq |
| 沉积日期 deposition_date | 2023-08-23 |
| 结构标题 title | ;Conformations of macrocyclic peptides sampled by exact NOEs: models for cell-permeability. Conformation 1 of omphalotin A in apolar solvents.
; |
| 关键词 keywords | cyclic peptide, exact NOEs, cell-permeability, UNKNOWN FUNCTION; UNKNOWN FUNCTION |
| 实验方法 method | SOLUTION NMR |
| 回转半径 Rg (Guinier) rg_guinier | 3.90 Å |
| 回转半径 Rg (电子) rg_electron | 6.50 Å |
| 零角强度 I(0) i0 | 2955510.00 |
| 分子量 molecular_weight | 25248.0 kDa |
| 排除体积 excluded_volume | 36589 ų |
| 包络体积 envelope_volume | 3651 ų |
| 水化壳体积 shell_volume | 4452 ų |
| 包络直径 envelope_diameter | 25.7 Å |
| 壳层 Rg shell_rg | 12.27 Å |
| 包络 Rg envelope_rg | 8.10 Å |
| 形状 Rg shape_rg | 6.48 Å |
| 总 Rg total_rg | 7.31 Å |
| 总原子数 total_atoms | 3971 |
| 残基数 n_residues | 57 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
| 最大尺寸 Dmax dmax | 9.8 Å |
| Rg (实空间) rg_real | 4.16 Å |
| Rg 误差 (实空间) rg_real_error | 0.01 Å |
| I(0) (实空间) i0_real | 3.0270e+06 |
| I(0) 误差 (实空间) i0_real_error | 1.5150e+04 |
| Rg (倒空间) rg_reciprocal | 3.38 Å |
| I(0) (倒空间) i0_reciprocal | 2956000.0000 |
| 解质量估计 total_estimate | 0.6733 |
| 解质量评级 solution_quality |
REASONABLE
a REASONABLE solution
|
| P(r) 峰数 n_peaks | 1 |
| 主峰位置 r_peak_primary | 6.0 Å |
| 偏度 Skewness skewness | -0.211 |
| 峰度 Kurtosis kurtosis | -0.711 |
| 角度范围 angular_range | — – 0.5000 Å−1 |
| 当前正则化参数 α current_alpha | 0.6234 |
| 最高正则化参数 α highest_alpha | 80.2400 |
| 实空间数据点数 n_real_points | 80 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria |
AN1: 0.000;
Oscil: 0.998;
Stabil: 0.981;
Sysdev: 0.000;
Positv: 1.000;
Valcen: 0.821;
Smooth: 0.000
|
Entity 1
polymer
| 描述 description | TRP-MVA-ILE-MVA-MVA-SAR-MVA-IML-SAR-VAL-IML-SAR |
| 分子量 formula_weight | 1336.7 kDa |
| 来源方法 src_method | man |
| 拷贝数 entity_count | 1 |
聚合体 Polymer
| 聚合体类型 type | polypeptide(L) |
| 链编号 strand_id | Z |
| 原子数 atom_count | 3971 |
WVIVVGVIGVIG
来源 Source
| 来源生物 organism | Omphalotus olearius |
| NCBI 分类编号 ncbi_taxonomy_id | 72120 |
| 宿主生物 host_organism | Komagataella pastoris |
Conformations of Macrocyclic Peptides Sampled by Nuclear Magnetic Resonance: Models for Cell-Permeability.
J.Am.Chem.Soc. (2023)
Files (7)
- pr_distribution /app/data/pr_computation/qa/8qaq/pr_distribution.json
- pr_output /app/data/pr_computation/qa/8qaq/8qaq.pr.out
- pr_plot /app/data/visualization/pr_computation/qa/8qaq/8qaq_pr_distribution.png
- saxs_curve_dat /app/data/saxs_computation/qa/8qaq/8qaq.dat
- saxs_fit /app/data/saxs_computation/qa/8qaq/8qaq.fit
- saxs_log /app/data/saxs_computation/qa/8qaq/8qaq.log
- saxs_plot /app/data/visualization/saxs_computation/qa/8qaq/8qaq_saxs_profile.png
Curves (3)
| fit |
/app/data/saxs_computation/qa/8qaq/8qaq.fit |
| pddf |
/app/data/pr_computation/qa/8qaq/8qaq.pr.out |
| profile |
/app/data/saxs_computation/qa/8qaq/8qaq.dat |