8qo0
Asymmetric structure of the Borrelia bacteriophage BB1 procapsid, 3D class 2
Method: ELECTRON MICROSCOPY
SAXS 散射曲线 SAXS Profile
暂无 SAXS 图
P(r) 距离分布 P(r) Distribution
暂无 P(r) 图
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1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 8qo0 |
| 沉积日期 deposition_date | 2023-09-27 |
| 最后修订 last_revision | 2023-12-27 |
| 结构标题 title | Asymmetric structure of the Borrelia bacteriophage BB1 procapsid, 3D class 2 |
| 关键词 keywords | Portal, capsid, procapsid, scaffold, VIRAL PROTEIN; VIRAL PROTEIN |
| 实验方法 method | ELECTRON MICROSCOPY |
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2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
该条目暂无 SAXS 数据。
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3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
该条目暂无 P(r) 分析数据。
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4. 晶体学与实验 4. Crystallography & Experiment
晶胞参数 Unit Cell
| 晶胞边长 a length_a | 1.000 Å |
| 晶胞边长 b length_b | 1.000 Å |
| 晶胞边长 c length_c | 1.000 Å |
| 晶胞夹角 α angle_alpha | 90.00 ° |
| 晶胞夹角 β angle_beta | 90.00 ° |
| 晶胞夹角 γ angle_gamma | 90.00 ° |
| 晶胞分子数 Z z_pdb | — |
对称性 Symmetry
| 空间群 space_group | P 1 |
| 空间群编号 int_tables_number | 1 |
| 晶系 crystal_system | — |
冷冻电镜 EM 3D
| 分辨率 resolution | 10.62 Å |
| 分辨率测定方法 resolution_method | — |
| 颗粒数 num_particles | 5505 |
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5. 实体与聚合体信息 (6)
Entity 1 polymer
| 描述 description | Cytosolic protein |
| 分子量 formula_weight | 36255.6 kDa |
| 来源方法 src_method | man |
| 拷贝数 entity_count | 415 |
聚合体 Polymer
| 聚合体类型 type | polypeptide(L) |
| 链编号 strand_id | ;AA,AB,AC,AD,AE,AF,AG,AH,AI,AJ,AK,AL,AM,AN,AO,AP,AQ,AR,AS,AT,AU,AV,AW,AX,AY,AZ,Aa,Ab,Ac,Ad,Ae,Af,Ag,Ah,Ai,Aj,Ak,Al,Am,An,Ao,Ap,Aq,Ar,As,At,Au,Av,Aw,Ax,Ay,Az,BA,BB,BC,BD,BE,BF,BG,BH,BI,BJ,BK,BL,BM,BN,BO,BP,BQ,BR,BS,BT,BU,BV,BW,BX,BY,BZ,Ba,Bb,Bc,Bd,Be,Ep,Eq,Er,Es,Et,Eu,Ev,Ew,Ex,Ey,Ez,FA,FB,FC,FD,FE,FF,FG,FH,FI,FJ,FK,FL,FM,FN,FO,FP,FQ,FR,FS,FT,FU,FV,FW,FX,FY,FZ,Fa,Fb,Fc,Fd,Fe,Ff,Fg,Fh,Fi,Fj,Fk,Fl,Fm,Fn,Fo,Fp,Fq,Fr,Fs,Ft,Fu,Fv,Fw,Fx,Fy,Fz,GA,GB,GC,GD,GE,GF,GG,GH,GI,GJ,GK,GL,GM,GN,GO,GP,GQ,GR,GS,GT,Je,Jf,Jg,Jh,Ji,Jj,Jk,Jl,Jm,Jn,Jo,Jp,Jq,Jr,Js,Jt,Ju,Jv,Jw,Jx,Jy,Jz,KA,KB,KC,KD,KE,KF,KG,KH,KI,KJ,KK,KL,KM,KN,KO,KP,KQ,KR,KS,KT,KU,KV,KW,KX,KY,KZ,Ka,Kb,Kc,Kd,Ke,Kf,Kg,Kh,Ki,Kj,Kk,Kl,Km,Kn,Ko,Kp,Kq,Kr,Ks,Kt,Ku,Kv,Kw,Kx,Ky,Kz,LA,LB,LC,LD,LE,LF,LG,LH,LI,OT,OU,OV,OW,OX,OY,OZ,Oa,Ob,Oc,Od,Oe,Of,Og,Oh,Oi,Oj,Ok,Ol,Om,On,Oo,Op,Oq,Or,Os,Ot,Ou,Ov,Ow,Ox,Oy,Oz,PA,PB,PC,PD,PE,PF,PG,PH,PI,PJ,PK,PL,PM,PN,PO,PP,PQ,PR,PS,PT,PU,PV,PW,PX,PY,PZ,Pa,Pb,Pc,Pd,Pe,Pf,Pg,Ph,Pi,Pj,Pk,Pl,Pm,Pn,Po,Pp,Pq,Pr,Ps,Pt,Pu,Pv,Pw,Px,TI,TJ,TK,TL,TM,TN,TO,TP,TQ,TR,TS,TT,TU,TV,TW,TX,TY,TZ,Ta,Tb,Tc,Td,Te,Tf,Tg,Th,Ti,Tj,Tk,Tl,Tm,Tn,To,Tp,Tq,Tr,Ts,Tt,Tu,Tv,Tw,Tx,Ty,Tz,UA,UB,UC,UD,UE,UF,UG,UH,UI,UJ,UK,UL,UM,UN,UO,UP,UQ,UR,US,UT,UU,UV,UW,UX,UY,UZ,Ua,Ub,Uc,Ud,Ue,Uf,Ug,Uh,Ui,Uj,Uk,Ul,Um ; |
| 原子数 atom_count | 2049537 |
MELFDENYYAKAVANIIGEVKDPIMYKWFSPDQIEDVDLQMGYQKTVKWDAFLNANPTTIANEVNTISTIGFSSEVVRLNYLKLQYKFRHLKQTSEKFYTSDSYIGDINNNLLPFAQAYKLASSEIIKLINHFVLTGTVSIQKDGKNQKRLLPNMYGLLNMPEQIKEEVASGDKDKMDKIFEKIEAGLSKLELGDEFSTPMMVIVDPATSLKLVKPYAAAQGAASSCEKWEDVLIQTIKAINNREDVYIETSNLLKHKILIYPLNSELIKFKPSKYMLPTPNEQVDKDSTDVAHSYIDFVLGGLLATRKTILQVNIKQS
来源 Source
| 来源生物 organism | Borreliella burgdorferi B31 |
| NCBI 分类编号 ncbi_taxonomy_id | 224326 |
| 宿主生物 host_organism | Escherichia coli BL21 |
Entity 2 polymer
| 描述 description | Decoration protein P03 |
| 分子量 formula_weight | 20026.5 kDa |
| 来源方法 src_method | man |
| 拷贝数 entity_count | 280 |
聚合体 Polymer
| 聚合体类型 type | polypeptide(L) |
| 链编号 strand_id | ;Bf,Bg,Bh,Bi,Bj,Bk,Bl,Bm,Bn,Bo,Bp,Bq,Br,Bs,Bt,Bu,Bv,Bw,Bx,By,Bz,CA,CB,CC,CD,CE,CF,CG,CH,CI,CJ,CK,CL,CM,CN,CO,CP,CQ,CR,CS,CT,CU,CV,CW,CX,CY,CZ,Ca,Cb,Cc,Cd,Ce,Cf,Cg,Ch,Ci,GU,GV,GW,GX,GY,GZ,Ga,Gb,Gc,Gd,Ge,Gf,Gg,Gh,Gi,Gj,Gk,Gl,Gm,Gn,Go,Gp,Gq,Gr,Gs,Gt,Gu,Gv,Gw,Gx,Gy,Gz,HA,HB,HC,HD,HE,HF,HG,HH,HI,HJ,HK,HL,HM,HN,HO,HP,HQ,HR,HS,HT,HU,HV,HW,HX,LJ,LK,LL,LM,LN,LO,LP,LQ,LR,LS,LT,LU,LV,LW,LX,LY,LZ,La,Lb,Lc,Ld,Le,Lf,Lg,Lh,Li,Lj,Lk,Ll,Lm,Ln,Lo,Lp,Lq,Lr,Ls,Lt,Lu,Lv,Lw,Lx,Ly,Lz,MA,MB,MC,MD,ME,MF,MG,MH,MI,MJ,MK,ML,MM,Py,Pz,QA,QB,QC,QD,QE,QF,QG,QH,QI,QJ,QK,QL,QM,QN,QO,QP,QQ,QR,QS,QT,QU,QV,QW,QX,QY,QZ,Qa,Qb,Qc,Qd,Qe,Qf,Qg,Qh,Qi,Qj,Qk,Ql,Qm,Qn,Qo,Qp,Qq,Qr,Qs,Qt,Qu,Qv,Qw,Qx,Qy,Qz,RA,RB,Un,Uo,Up,Uq,Ur,Us,Ut,Uu,Uv,Uw,Ux,Uy,Uz,VA,VB,VC,VD,VE,VF,VG,VH,VI,VJ,VK,VL,VM,VN,VO,VP,VQ,VR,VS,VT,VU,VV,VW,VX,VY,VZ,Va,Vb,Vc,Vd,Ve,Vf,Vg,Vh,Vi,Vj,Vk,Vl,Vm,Vn,Vo,Vp,Vq ; |
MSDITKIKQEFDKKVAEIQALMKNPQQDSGLLSNSIDFRDQNLIFSNSGGVCTSSKDKIENYPAKGYPYKRGVKLSFGDGTTELEVEAGGGDDLYGVCSDIDEFSGMATVIPITNNFTGYLTLKKDGQNGVNPGDKLNFNQHGELEKVTGAQKSVNAIALSKAHKLTEDLFIVLASVFGNRAIKG
来源 Source
| 来源生物 organism | Borreliella burgdorferi B31 |
| NCBI 分类编号 ncbi_taxonomy_id | 224326 |
| 宿主生物 host_organism | Escherichia coli BL21 |
Entity 3 polymer
| 描述 description | Decoration protein P04 |
| 分子量 formula_weight | 28067.3 kDa |
| 来源方法 src_method | man |
| 拷贝数 entity_count | 5 |
聚合体 Polymer
| 聚合体类型 type | polypeptide(L) |
| 链编号 strand_id | Cj,HY,MN,RC,Vr |
MALKGNMQVENLEAVEDPQVDLGAQVSAAPRAKRQARQAEDVQGEDPYLESISELDDVLLKFKKYSKSMSSIENKVFSSSSGCFKSKNERVDAYSFACSSYTDKIEEYLYDPANSFPYKRGVKLVPKENSIYVEVGADTDMYGICVDVCEFSCTAYVLPITNNFEGYLVTRNPSIKIGEILDINNNGVIIKAGGGPPTAINIYALSDSFTINFAPEDGNQDQNRYPRQEYSINLIKVAIFGNRGLEKTVNPDGG
来源 Source
| 来源生物 organism | Borreliella burgdorferi B31 |
| NCBI 分类编号 ncbi_taxonomy_id | 224326 |
| 宿主生物 host_organism | Escherichia coli BL21 |
Entity 4 polymer
| 描述 description | DUF228 domain-containing protein |
| 分子量 formula_weight | 21274.9 kDa |
| 来源方法 src_method | man |
| 拷贝数 entity_count | 130 |
聚合体 Polymer
| 聚合体类型 type | polypeptide(L) |
| 链编号 strand_id | ;Ck,Cl,Cm,Cn,Co,Cp,Cq,Cr,Cs,Ct,Cu,Cv,Cw,Cx,Cy,Cz,DA,DB,DC,DD,DE,DF,DG,DH,DI,DJ,HZ,Ha,Hb,Hc,Hd,He,Hf,Hg,Hh,Hi,Hj,Hk,Hl,Hm,Hn,Ho,Hp,Hq,Hr,Hs,Ht,Hu,Hv,Hw,Hx,Hy,MO,MP,MQ,MR,MS,MT,MU,MV,MW,MX,MY,MZ,Ma,Mb,Mc,Md,Me,Mf,Mg,Mh,Mi,Mj,Mk,Ml,Mm,Mn,RD,RE,RF,RG,RH,RI,RJ,RK,RL,RM,RN,RO,RP,RQ,RR,RS,RT,RU,RV,RW,RX,RY,RZ,Ra,Rb,Rc,Vs,Vt,Vu,Vv,Vw,Vx,Vy,Vz,WA,WB,WC,WD,WE,WF,WG,WH,WI,WJ,WK,WL,WM,WN,WO,WP,WQ,WR ; |
MGDTTQLVKEYQEKRSKLEKFMKNPQHDASLLSNSNEFRDKNVEFFASGGTRTSKFDKLENHPFLGYPYKRGVKRVIQEAQDNQSHYEPHVEAGGGEDLYGICIDIDEFSKTATIVPITNNFEGYLVAKDSTVKVKDKLIFNKDGALEKVTGAPNKATINATALTDAKQISNEVYLVKVAVFGNKAMSRN
来源 Source
| 来源生物 organism | Borreliella burgdorferi B31 |
| NCBI 分类编号 ncbi_taxonomy_id | 224326 |
| 宿主生物 host_organism | Escherichia coli BL21 |
Entity 5 polymer
| 描述 description | Scaffold protein |
| 分子量 formula_weight | 26710.4 kDa |
| 来源方法 src_method | man |
| 拷贝数 entity_count | 826 |
聚合体 Polymer
| 聚合体类型 type | polypeptide(L) |
| 链编号 strand_id | ;DK,DL,DM,DN,DO,DP,DQ,DR,DS,DT,DU,DV,DW,DX,DY,DZ,Da,Db,Dc,Dd,De,Df,Dg,Dh,Di,Dj,Dk,Dl,Dm,Dn,Do,Dp,Dq,Dr,Ds,Dt,Du,Dv,Dw,Dx,Dy,Dz,EA,EB,EC,ED,EE,EF,EG,EH,EI,EJ,EK,EL,EM,EN,EO,EP,EQ,ER,ES,ET,EU,EV,EW,EX,EY,EZ,Ea,Eb,Ec,Ed,Ee,Ef,Eg,Eh,Ei,Ej,Ek,El,Em,En,Eo,Hz,IA,IB,IC,ID,IE,IF,IG,IH,II,IJ,IK,IL,IM,IN,IO,IP,IQ,IR,IS,IT,IU,IV,IW,IX,IY,IZ,Ia,Ib,Ic,Id,Ie,If,Ig,Ih,Ii,Ij,Ik,Il,Im,In,Io,Ip,Iq,Ir,Is,It,Iu,Iv,Iw,Ix,Iy,Iz,JA,JB,JC,JD,JE,JF,JG,JH,JI,JJ,JK,JL,JM,JN,JO,JP,JQ,JR,JS,JT,JU,JV,JW,JX,JY,JZ,Ja,Jb,Jc,Jd,Mo,Mp,Mq,Mr,Ms,Mt,Mu,Mv,Mw,Mx,My,Mz,NA,NB,NC,ND,NE,NF,NG,NH,NI,NJ,NK,NL,NM,NN,NO,NP,NQ,NR,NS,NT,NU,NV,NW,NX,NY,NZ,Na,Nb,Nc,Nd,Ne,Nf,Ng,Nh,Ni,Nj,Nk,Nl,Nm,Nn,No,Np,Nq,Nr,Ns,Nt,Nu,Nv,Nw,Nx,Ny,Nz,OA,OB,OC,OD,OE,OF,OG,OH,OI,OJ,OK,OL,OM,ON,OO,OP,OQ,OR,OS,Rd,Re,Rf,Rg,Rh,Ri,Rj,Rk,Rl,Rm,Rn,Ro,Rp,Rq,Rr,Rs,Rt,Ru,Rv,Rw,Rx,Ry,Rz,SA,SB,SC,SD,SE,SF,SG,SH,SI,SJ,SK,SL,SM,SN,SO,SP,SQ,SR,SS,ST,SU,SV,SW,SX,SY,SZ,Sa,Sb,Sc,Sd,Se,Sf,Sg,Sh,Si,Sj,Sk,Sl,Sm,Sn,So,Sp,Sq,Sr,Ss,St,Su,Sv,Sw,Sx,Sy,Sz,TA,TB,TC,TD,TE,TF,TG,TH,WS,WT,WU,WV,WW,WX,WY,WZ,Wa,Wb,Wc,Wd,We,Wf,Wg,Wh,Wi,Wj,Wk,Wl,Wm,Wn,Wo,Wp,Wq,Wr,Ws,Wt,Wu,Wv,Ww,Wx,Wy,Wz,XA,XB,XC,XD,XE,XF,XG,XH,XI,XJ,XK,XL,XM,XN,XO,XP,XQ,XR,XS,XT,XU,XV,XW,XX,XY,XZ,Xa,Xb,Xc,Xd,Xe,Xf,Xg,Xh,Xi,Xj,Xk,Xl,Xm,Xn,Xo,Xp,Xq,Xr,Xs,Xt,Xu,Xv,Xw,YJ,YK,YL,YM,YN,YO,YP,YQ,YR,YS,YT,YU,YV,YW,YX,YY,YZ,Ya,Yb,Yc,Yd,Ye,Yf,Yg,Yh,Yi,Yj,Yk,Yl,Ym,Yn,Yo,Yp,Yq,Yr,Ys,Yt,Yu,Yv,Yw,Yx,Yy,Yz,ZA,ZB,ZC,ZD,ZE,ZF,ZG,ZH,ZI,ZJ,ZK,ZL,ZM,ZN,ZO,ZP,ZQ,ZR,ZS,ZT,ZU,ZV,ZW,ZX,ZY,ZZ,Za,Zb,Zc,Zd,Ze,Zf,Zg,Zh,Zi,Zj,Zk,Zl,Zm,Zn,Zo,Zp,Zq,Zr,Zs,Zt,Zu,Zv,Zw,Zx,Zy,Zz,aA,aB,aC,aD,aE,aF,aG,aH,aI,aJ,aK,aL,aM,aN,aO,aP,aQ,aR,aS,aT,aU,aV,aW,aX,aY,aZ,aa,ab,ac,ad,ae,af,ag,ah,ai,aj,ak,al,am,an,ao,ap,aq,ar,as,at,au,av,aw,ax,ay,az,bA,bB,bC,bD,bE,bF,bG,bH,bI,bJ,bK,bL,bM,bN,bO,bP,bQ,bR,bS,bT,bU,bV,bW,bX,bY,bZ,ba,bb,bc,bd,be,bf,bg,bh,bi,bj,bk,bl,bm,bn,bo,bp,bq,br,bs,bt,bu,bv,bw,bx,by,bz,cA,cB,cC,cD,cE,cF,cG,cH,cI,cJ,cK,cL,cM,cN,cO,cP,cQ,cR,cS,cT,cU,cV,cW,cX,cY,cZ,ca,cb,cc,cd,ce,cf,cg,ch,ci,cj,ck,cl,cm,cn,co,cp,cq,cr,cs,ct,cu,cv,cw,cx,cy,cz,dA,dB,dC,dD,dE,dF,dG,dH,dI,dJ,dK,dL,dM,dN,dO,dP,dQ,dR,dS,dT,dU,dV,dW,dX,dY,dZ,da,db,dc,dd,de,df,dg,dh,di,dj,dk,dl,dm,dn,do,dp,dq,dr,ds,dt,du,dv,dw,dx,dy,dz,eA,eB,eC,eD,eE,eF,eG,eH,eI,eJ,eK,eL,eM,eN,eO,eP,eQ,eR,eS,eT,eU,eV,eW,eX,eY,eZ,ea,eb,ec,ed,ee,ef,eg,eh,ei,ej,ek,el,em,en,eo,ep,eq,er,es,et,eu,ev,ew,ex,ey,ez,fA,fB,fC,fD,fE,fF,fG,fH,fI,fJ,fK,fL,fM,fN,fO,fP,fQ,fR,fS,fT,fU,fV,fW,fX,fY,fZ,fa,fb,fc,fd,fe,ff,fg,fh,fi,fj,fk,fl,fm,fn,fo,fp,fq,fr,fs,ft,fu,fv,fw,fx,fy,fz,gA,gB,gC,gD ; |
MTEKEEKEDLQAQDKEEQQIKADTKVISVQEFEEYMRFKEQANSKSKETSRDLSINERITKELAEVEERERIEKQLLLEAERINEIDTLAKAHLSNHFNKEVLLAKGYTLKDIMQAQRRELVRKFVPIEQIKAIAKVSDISHIDGEILEQLVSLAKVNIKLRKNASSSSSSVDSIKGNIAIKSEERASLLDSNFVPINFTEFVQAISNTYKQRRIQFYENLKRHKRTSIA
来源 Source
| 来源生物 organism | Borreliella burgdorferi B31 |
| NCBI 分类编号 ncbi_taxonomy_id | 224326 |
| 宿主生物 host_organism | Escherichia coli BL21 |
Entity 6 polymer
| 描述 description | Putative phage portal protein |
| 分子量 formula_weight | 47095.5 kDa |
| 来源方法 src_method | man |
| 拷贝数 entity_count | 12 |
聚合体 Polymer
| 聚合体类型 type | polypeptide(L) |
| 链编号 strand_id | Xx,Xy,Xz,YA,YB,YC,YD,YE,YF,YG,YH,YI |
MCDLRKTKLIDKISSLELYKYSIFFRNYIENVAEDCLKNGLILESAAHNVSEVELARLKVQLKNALLNCIISYRFHGIGYVLVKTKDTLIDLEQPVNIELPIGFEYLDYEYVRDLGVDFDHITYKVKSNNKNNSLDAVKIHKSRLIIYENFDYILKRYVPCYTESFLLDIYLFEKIYVEIERRIENHNFLFYKDESLVQLQDALSSATTSLSALTQSNNDRGSGILSSFLRKQNSNNHSKDISNLRNLNDSLSQELARLKSNLNNEGMFYTATPSASLEVIKYDLSYLKEALALIKAKIGADTKEPLTRSFNEQAKGLGNDGKGDRSNYYDFLKGVQEQVENSCNLKLTKYFGLDMKFNSLIMLSEEQKVERDIKLIELYSKYNQLIQSSSFNNEELAMLKEKLFSF
来源 Source
| 来源生物 organism | Borreliella burgdorferi B31 |
| NCBI 分类编号 ncbi_taxonomy_id | 224326 |
| 宿主生物 host_organism | Escherichia coli BL21 |
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7. 引用文献 (1)
Structure of the Borrelia Bacteriophage phi BB1 Procapsid.
J.Mol.Biol. (2023)
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8. 文件与曲线 (0)
该条目暂无文件或曲线数据。