;Complex of rice blast (Magnaporthe oryzae) mutant effector protein PWL2-SNDE with the HMA domain of OsHIPP43 from rice (Oryza sativa) ;

条目编号 entry_id	8r7d
沉积日期 deposition_date	2023-11-24
结构标题 title	;Complex of rice blast (Magnaporthe oryzae) mutant effector protein PWL2-SNDE with the HMA domain of OsHIPP43 from rice (Oryza sativa) ;
关键词 keywords	Pathogen effector, host target protein, rice blast, disease resistance, PLANT PROTEIN; PLANT PROTEIN
实验方法 method	X-RAY DIFFRACTION

回转半径 Rg (Guinier) rg_guinier	24.15 Å
回转半径 Rg (电子) rg_electron	23.35 Å
零角强度 I(0) i0	31977600.00
分子量 molecular_weight	40103.0 kDa
排除体积 excluded_volume	48830 ų
包络体积 envelope_volume	60395 ų
水化壳体积 shell_volume	22405 ų
包络直径 envelope_diameter	75.9 Å
壳层 Rg shell_rg	29.13 Å
包络 Rg envelope_rg	23.26 Å
形状 Rg shape_rg	23.35 Å
总 Rg total_rg	24.01 Å
总原子数 total_atoms	2821
残基数 n_residues	359
球谐函数阶数 n_harmonics	20
q 范围 q_range	— – 0.5000 Å−1
数据点数 n_points	101
壳层类型 shell_type	directional
溶剂电子密度 solvent_density	0.3340 e/ų
壳层衬度 contrast_shell	0.0300 e/ų
CRYSOL 版本 crysol_version	4.1.3

最大尺寸 Dmax dmax	75.4 Å
Rg (实空间) rg_real	24.24 Å
Rg 误差 (实空间) rg_real_error	0.42 Å
I(0) (实空间) i0_real	3.1980e+07
I(0) 误差 (实空间) i0_real_error	3.9500e+05
Rg (倒空间) rg_reciprocal	24.22 Å
I(0) (倒空间) i0_reciprocal	31980000.0000
解质量估计 total_estimate	0.8915
解质量评级 solution_quality	GOOD a GOOD solution
P(r) 峰数 n_peaks	2
主峰位置 r_peak_primary	23.6 Å
偏度 Skewness skewness	0.407
峰度 Kurtosis kurtosis	-0.519
角度范围 angular_range	— – 0.3300 Å−1
当前正则化参数 α current_alpha	0.0000
最高正则化参数 α highest_alpha	10280000.0000
实空间数据点数 n_real_points	65
GNOM 版本 gnom_version	4.1.3
质量判据 quality_criteria	AN1: 0.000; Oscil: 0.896; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.950; Smooth: 0.948

晶胞参数 Unit Cell

晶胞边长 a length_a	66.378 Å
晶胞边长 b length_b	66.804 Å
晶胞边长 c length_c	81.901 Å
晶胞夹角 α angle_alpha	90.00 °
晶胞夹角 β angle_beta	90.00 °
晶胞夹角 γ angle_gamma	90.00 °
晶胞分子数 Z z_pdb	8

对称性 Symmetry

空间群 space_group	P 21 21 21
空间群编号 int_tables_number	19
晶系 crystal_system	—

精修参数 Refinement

分辨率 resolution	2.500 Å
最低分辨率 resolution_low	47.130 Å
R 因子 r_factor	0.2197
R_work r_work	0.2156
R_free r_free	0.2858

衍射实验 Diffraction

实验温度 temperature

100.0 K

Files (7)

• pr_distribution /app/data/pr_computation/r7/8r7d/pr_distribution.json
• pr_output /app/data/pr_computation/r7/8r7d/8r7d.pr.out
• pr_plot /app/data/visualization/pr_computation/r7/8r7d/8r7d_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/r7/8r7d/8r7d.dat
• saxs_fit /app/data/saxs_computation/r7/8r7d/8r7d.fit
• saxs_log /app/data/saxs_computation/r7/8r7d/8r7d.log
• saxs_plot /app/data/visualization/saxs_computation/r7/8r7d/8r7d_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/r7/8r7d/8r7d.fit
pddf	/app/data/pr_computation/r7/8r7d/8r7d.pr.out
profile	/app/data/saxs_computation/r7/8r7d/8r7d.dat