SAXSdb — 8roq

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1. 结构基本信息 1. Structure Basics

条目编号 entry_id	8roq
沉积日期 deposition_date	2024-01-12
结构标题 title	FAdV-C4 Aviadenovirus structure, strain KR5
关键词 keywords	adenovirus, fowl, highly thermostable, VIRUS; VIRUS
实验方法 method	ELECTRON MICROSCOPY

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2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier	79.23 Å
回转半径 Rg (电子) rg_electron	79.20 Å
零角强度 I(0) i0	26924700000.00
分子量 molecular_weight	1382600.0 kDa
排除体积 excluded_volume	1718300 Å³
包络体积 envelope_volume	2359200 Å³
水化壳体积 shell_volume	238680 Å³
包络直径 envelope_diameter	299.9 Å
壳层 Rg shell_rg	83.27 Å
包络 Rg envelope_rg	79.04 Å
形状 Rg shape_rg	79.17 Å
总 Rg total_rg	79.33 Å
总原子数 total_atoms	97638
残基数 n_residues	12237
球谐函数阶数 n_harmonics	20
q 范围 q_range	— – 0.5000 Å⁻¹
数据点数 n_points	101
壳层类型 shell_type	directional
溶剂电子密度 solvent_density	0.3340 e/Å³
壳层衬度 contrast_shell	0.0300 e/Å³
CRYSOL 版本 crysol_version	4.1.3

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3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax	209.9 Å
Rg (实空间) rg_real	75.29 Å
Rg 误差 (实空间) rg_real_error	0.53 Å
I(0) (实空间) i0_real	2.5780e+10
I(0) 误差 (实空间) i0_real_error	4.6290e+08
Rg (倒空间) rg_reciprocal	78.90 Å
I(0) (倒空间) i0_reciprocal	26900000000.0000
解质量估计 total_estimate	0.6847
解质量评级 solution_quality	REASONABLE a REASONABLE solution
P(r) 峰数 n_peaks	2
主峰位置 r_peak_primary	94.4 Å
偏度 Skewness skewness	0.211
峰度 Kurtosis kurtosis	-0.450
角度范围 angular_range	— – 0.1000 Å⁻¹
当前正则化参数 α current_alpha	0.4162
最高正则化参数 α highest_alpha	1766000000.0000
实空间数据点数 n_real_points	21
GNOM 版本 gnom_version	4.1.3
质量判据 quality_criteria	AN1: 0.001; Oscil: 0.986; Stabil: 0.986; Sysdev: 0.002; Positv: 1.000; Valcen: 0.969; Smooth: 0.023

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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合体信息 (4)

Entity 1 polymer

描述 description	Hexon protein
分子量 formula_weight	106129.8 kDa
来源方法 src_method	nat
拷贝数 entity_count	12

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	A,B,C,D,E,F,G,H,I,J,K,L
原子数 atom_count	97638

MAALTPDLTTATPRLQYFHIAGPGTREYLSEDLQQFISATGSYFDLKNKFRQTVVAPTRNVTTEKAQRLQIRFYPIQTDDTSTGYRVRYNINVGDGWVLDMGSTYFDIKGILDRGPSFKPYCGTAYNPLAPKESMFNNWSETAPGQNVSASGQLSNVYTNTSTTKDTTAAQVTKISGVFPNPNQGPGINPLRQVENANTGVLGRFAKSQYNYAYGAYVKPVAADGSQSLTQTPYWIMNNAGTEYLGAVAVEDYTNSLSYPDTMIVPPPEDYDDYNIGTTRALRPNYIGFRDNFINLLYHDSGVCSGTLNSERSGMNVVVELPDRNTELSYQYMLADMMSRHHYFALWNQAVDQYDPEVRVFSNDGYEEGAPSYAFNPEAVGAGEGYGPDLSQIKLYTNNTAANDKNTAVTNATTNFYFGTVPSYEIDISATQRRNFIMANIAEYLPDRYKFSISGFDATSVAPTTYEYMNKRVPLTNVVDMFTNVGARWSIDQMDNVNPFNHHRNWGLKYRSQLLGNSRYVNFHIQVPQKFFAIKNLLLLSGSYTYEWVLRKDPNMILQSSLGNDLRADGASIIYNEVNLMANFMPMDHNTSNQLELMLRNATNDQTFVDYLGAKNALYSVPAGSTALTINIPARTWEGMRGWSFTRIKAAETPQLGAQYDVNFKYSGSIAYSDGGFYLSHTFRNMSILFDTSINWPGNDRLLTPNMFEIKRSVALDTEGFTMSQCDITKDWYLIQMATNYNFVYNGYRFWPDRQYFHYDFLRNFDPMTRQGPNFALPGLFDLVSYTPTTDNSGEQPSQEAVRNNSGFIAPRSWPVWSAHQGESWPANWPYPLCGQQAIQPGQVLSYKKFLCDNYLWTIPFSSDFMYMGELTDLGQNPMYTNNSHSMVINFELDPMDDPTYVYMLYGVFDTVRVNQPERNVLAMAYFRTPFATGNAV

Entity 2 polymer

描述 description	Penton protein
分子量 formula_weight	57448.2 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	M

MWGLQPPTSIPPPPPPTELTPSTYPAMVNGYPPPAASAQSCSSSGGQSELYMPLQRVMAPTGGRNSIKYRDYTPCRNTTKLFYVDNKASDIDTYNKDANHSNFRTTVIHNQDLDADTAATESIQLDNRSCWGGDLKTAVRTNCPNVSSFFQSNSVRVRMMWKRDPPTSTAPPSAVGSGYSVPGAQYKWYDLTVPEGNYALCELIDLLNEGIVQLYLSEGRQNNVQKSDIGVKFDTRNFGLLRDPVTGLVTPGTYVYKGYHPDIVLLPGCAIDFTYSRLSLLLGIGKREPYSKGFVITYEDLQGGDIPALLDLDSVDVNDADGEVIELDNAAPLLHDSAGVSYNVIYDQVTGKPVTAYRSWMLAYNVPNSQANQTTLLTVPDMAGGIGAMYTSLPDTFIAPTGFKEDNTTNLCPVVGMNLFPTYNKIYYQAASTYVQRLENSCQSATAAFNRFPENEILKQAPPMNVSSVCDNQPAVVQQGVLPVKSSLPGLQRVLITDDQRRPIPYVYKSIATVQPTVLSSATLQ

Entity 3 polymer

描述 description	PIIIa
分子量 formula_weight	65326.3 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	N

MSSTEVFGALAPVGRTEVADALSSHANSKDARSLRYEPYANRLIKLQTAMVPPKVDGTSERVAEVVKGLAEQGAIYPDQMGAIHSDLLNRVYTWNSMGVQESIQALVNDVIHGQNKVLQDELARTREIANASMLTRFFDSLYKTVDRGQRNFEGFKKLLRLFVNNVPNAEVYSSGGSFSLQINMGGQSQNINLTNAFDNLKDIWGARWDAVNNPRIGALLTPNTRALLFFVSTFYDYGSMEPGSYLDNLMRLYKEAIRADTDAEGDAIMELGDAGANLNLKFNQYKDTLNYLLQNKPSVPQTGPLEMSPEQESLFKYLMRQLRRALKDGVNSDIAISTMAQYVDPRLYTSNKVFIDKLQNYLLMASARNPYYYKTIVLDPHWVPPAGLYTDNFVIPEMMPNFSDFASELEYGGPSRDEYFDDSPFRPPPQKKFTEKEQADYDSLINFFDSTLGVQSEAGWIADHRLPQAFDGALNVSERTPYNTPLPDDAPMRSRNASVSSATDALGQLKLSGTGGAGFFDSLKPSVGTRRSTGLAKGLAGTGQPPCPWPASVGYASAGYGPARGIRGSGLARRALAARGLRQGKRLRFY

Entity 4 polymer

描述 description	Pre-hexon-linking protein VIII
分子量 formula_weight	26882.2 kDa
来源方法 src_method	nat
拷贝数 entity_count	2

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	O,P

MNLLNAAPTPYVWKYNPVTGKCAGAQQNYGATIDWVLPGGNSFAYAADEIRRRFPEPAVTRAITARFEAESDQQPYAGPHETNIITADVVRSGPPPSAVYPFDPSGVQRVQLSGGMMGGRTEGRMQLSGGLTEGRMQLAGGAAGKLPTRARPTLRPPRWCGTTLTGNGLPADYPEMTPDAFKYYLRVQGPSQEVDEPGVMSQRQFMTTFLPAMVPHPFDSESPDAFPAYFSSVYKGTNAFEPVFWQG

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7. 引用文献 (1)

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分辨率 resolution	3.40 Å
分辨率测定方法 resolution_method	—
颗粒数 num_particles	9466

fit	/app/data/saxs_computation/ro/8roq/8roq.fit
pddf	/app/data/pr_computation/ro/8roq/8roq.pr.out
profile	/app/data/saxs_computation/ro/8roq/8roq.dat

FAdV-C4 Aviadenovirus structure, strain KR5

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

1. 结构基本信息 1. Structure Basics

2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

4. 晶体学与实验 4. Crystallography & Experiment

冷冻电镜 EM 3D

5. 实体与聚合体信息 (4)

Entity 1 polymer

聚合体 Polymer

Entity 2 polymer

聚合体 Polymer

Entity 3 polymer

聚合体 Polymer

Entity 4 polymer

聚合体 Polymer

7. 引用文献 (1)

8. 文件与曲线 (10)

Files (7)

Curves (3)