8rqe
Composite map of bacteriophage JBD30 capsid - neck complex
Method: ELECTRON MICROSCOPY
SAXS 散射曲线 SAXS Profile
暂无 SAXS 图
P(r) 距离分布 P(r) Distribution
暂无 P(r) 图
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1. 结构基本信息 1. Structure Basics
| 条目编号 entry_id | 8rqe |
| 沉积日期 deposition_date | 2024-01-18 |
| 结构标题 title | Composite map of bacteriophage JBD30 capsid - neck complex |
| 关键词 keywords | bacteriophage JBD30, virion, capsid, connector, neck, portal, adaptor, stopper, tail, VIRAL PROTEIN; VIRAL PROTEIN |
| 实验方法 method | ELECTRON MICROSCOPY |
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2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)
该条目暂无 SAXS 数据。
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3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)
该条目暂无 P(r) 分析数据。
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4. 晶体学与实验 4. Crystallography & Experiment
冷冻电镜 EM 3D
| 分辨率 resolution | 8.00 Å |
| 分辨率测定方法 resolution_method | — |
| 颗粒数 num_particles | 2913 |
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5. 实体与聚合体信息 (6)
Entity 1 polymer
| 描述 description | Mu-like prophage FluMu N-terminal domain-containing protein |
| 分子量 formula_weight | 12112.1 kDa |
| 来源方法 src_method | nat |
| 拷贝数 entity_count | 420 |
聚合体 Polymer
| 聚合体类型 type | polypeptide(L) |
| 链编号 strand_id | ;aa,ab,ac,ad,ae,af,an,ao,ap,aq,ar,as,at,aA,aB,aC,aD,aE,aF,aG,aO,aP,aQ,aR,aS,aT,aU,bc,bd,be,bf,bg,bh,bi,bq,br,bs,bt,bu,bv,bw,bE,bF,bG,bH,bI,bJ,bK,bR,bS,bT,bU,bV,bW,bX,cf,cg,ch,ci,cj,ck,cl,ct,cu,cv,cw,cx,cy,cz,cH,cI,cJ,cK,cL,cM,cN,cV,cW,cX,cY,cZ,da,db,dj,dk,dl,dm,dn,do,dp,dx,dy,dz,dA,dB,dC,dD,dL,dM,dN,dO,dP,dQ,dR,dZ,ea,eb,ec,ed,ee,ef,en,eo,ep,eq,er,es,et,eB,eC,eD,eE,eF,eG,eH,eP,eQ,eR,eS,eT,eU,eV,fd,fe,ff,fg,fh,fi,fj,fr,fs,ft,fu,fv,fw,fx,fF,fG,fH,fI,fJ,fK,fL,fT,fU,fV,fW,fX,fY,fZ,gh,gi,gj,gk,gl,gm,gn,gv,gw,gx,gy,gz,gA,gB,gJ,gK,gL,gM,gN,gO,gP,gX,gY,gZ,ha,hb,hc,hd,hl,hm,hn,ho,hp,hq,hr,hy,hz,hA,hB,hC,hD,hE,hL,hM,hN,hO,hP,hQ,hR,hZ,ia,ib,ic,id,ie,if,in,io,ip,iq,ir,is,it,iB,iC,iD,iE,iF,iG,iH,iP,iQ,iR,iS,iT,iU,iV,jd,je,jf,jg,jh,ji,jj,jr,js,jt,ju,jv,jw,jx,jF,jG,jH,jI,jJ,jK,jL,jT,jU,jV,jW,jX,jY,jZ,kh,ki,kj,kk,kl,km,kn,ku,kv,kw,kx,ky,kz,kA,kI,kJ,kK,kL,kM,kN,kO,kW,kX,kY,kZ,la,lb,lc,lk,ll,lm,ln,lo,lp,lq,ly,lz,lA,lB,lC,lD,lE,lM,lN,lO,lP,lQ,lR,lS,ma,mb,mc,md,me,mf,mg,mo,mp,mq,mr,ms,mt,mu,mC,mD,mE,mF,mG,mH,mI,mQ,mR,mS,mT,mU,mV,mW,ne,nf,ng,nh,ni,nj,nk,ns,nt,nu,nv,nw,nx,ny,nG,nH,nI,nJ,nK,nL,nM,nU,nV,nW,nX,nY,nZ,oa,oi,oj,ok,ol,om,on,oo,ow,ox,oy,oz,oA,oB,oC,oK,oL,oM,oN,oO,oP,oQ,oY,oZ,pa,pb,pc,pd,pe,pm,pn,po,pp,pq,pr,ps,pA,pB,pC,pD,pE,pF,pG,pO,pP,pQ,pR,pS,pT,pU,qc ; |
| 原子数 atom_count | 1224397 |
MARQNSAAKTTAKSKTDPATEKPKDDTLPDSTDDASPTAPETPATKPDSASDEVEGVFVRATVERRCRAGFCFDKEGQGFADGVLSDEQLEALESDPLLKVERCTFSGNQEGE
Entity 2 polymer
| 描述 description | Bacteriophage Mu GpT domain-containing protein |
| 分子量 formula_weight | 33695.0 kDa |
| 来源方法 src_method | nat |
| 拷贝数 entity_count | 415 |
聚合体 Polymer
| 聚合体类型 type | polypeptide(L) |
| 链编号 strand_id | ;ag,ah,ai,aj,ak,al,am,au,av,aw,ax,ay,az,aH,aI,aJ,aK,aL,aM,aN,aV,aW,aX,aY,aZ,ba,bb,bj,bk,bl,bm,bn,bo,bp,bx,by,bz,bA,bB,bC,bD,bL,bM,bN,bO,bP,bQ,bY,bZ,ca,cb,cc,cd,ce,cm,cn,co,cp,cq,cr,cs,cA,cB,cC,cD,cE,cF,cG,cO,cP,cQ,cR,cS,cT,cU,dc,dd,de,df,dg,dh,di,dq,dr,ds,dt,du,dv,dw,dE,dF,dG,dH,dI,dJ,dK,dS,dT,dU,dV,dW,dX,dY,eg,eh,ei,ej,ek,el,em,eu,ev,ew,ex,ey,ez,eA,eI,eJ,eK,eL,eM,eN,eO,eW,eX,eY,eZ,fa,fb,fc,fk,fl,fm,fn,fo,fp,fq,fy,fz,fA,fB,fC,fD,fE,fM,fN,fO,fP,fQ,fR,fS,ga,gb,gc,gd,ge,gf,gg,go,gp,gq,gr,gs,gt,gu,gC,gD,gE,gF,gG,gH,gI,gQ,gR,gS,gT,gU,gV,gW,he,hf,hg,hh,hi,hj,hk,hs,ht,hu,hv,hw,hx,hF,hG,hH,hI,hJ,hK,hS,hT,hU,hV,hW,hX,hY,ig,ih,ii,ij,ik,il,im,iu,iv,iw,ix,iy,iz,iA,iI,iJ,iK,iL,iM,iN,iO,iW,iX,iY,iZ,ja,jb,jc,jk,jl,jm,jn,jo,jp,jq,jy,jz,jA,jB,jC,jD,jE,jM,jN,jO,jP,jQ,jR,jS,ka,kb,kc,kd,ke,kf,kg,ko,kp,kq,kr,ks,kt,kB,kC,kD,kE,kF,kG,kH,kP,kQ,kR,kS,kT,kU,kV,ld,le,lf,lg,lh,li,lj,lr,ls,lt,lu,lv,lw,lx,lF,lG,lH,lI,lJ,lK,lL,lT,lU,lV,lW,lX,lY,lZ,mh,mi,mj,mk,ml,mm,mn,mv,mw,mx,my,mz,mA,mB,mJ,mK,mL,mM,mN,mO,mP,mX,mY,mZ,na,nb,nc,nd,nl,nm,nn,no,np,nq,nr,nz,nA,nB,nC,nD,nE,nF,nN,nO,nP,nQ,nR,nS,nT,ob,oc,od,oe,of,og,oh,op,oq,or,os,ot,ou,ov,oD,oE,oF,oG,oH,oI,oJ,oR,oS,oT,oU,oV,oW,oX,pf,pg,ph,pi,pj,pk,pl,pt,pu,pv,pw,px,py,pz,pH,pI,pJ,pK,pL,pM,pN,pV,pW,pX,pY,pZ,qa,qb ; |
MAIITPALISALKTSFQKHFQDALATAPSTYLQVATVIPSTTASNTYGWLGQFPKLREWIGQRVIKDMAAQGYQITNKLFESTVGVKRTDIEDDNLGVYGPLMQEMGRAAGAHPDELVFALLKAGNANLCYDGQNFFDTDHPVYPNVDGTGTATTVSNLFAPAADPGAAWYLLDTSRSLKPLIYQERMKPSFTSMTKEDDEQVFMADEYRYGVRSRCNVGFGFWQLAAMSTEELNQVNFEKVYDAMRNQKADGGRPLDIRPNLLVVPTTLRSKAKEVVGVQRLANGADNPNFELVQVLDTAWLN
Entity 3 polymer
| 描述 description | Stopper protein |
| 分子量 formula_weight | 16990.2 kDa |
| 来源方法 src_method | nat |
| 拷贝数 entity_count | 6 |
聚合体 Polymer
| 聚合体类型 type | polypeptide(L) |
| 链编号 strand_id | qd,qe,qf,qg,qh,qi |
MSDPFDYLFLEPLLIERIRSEVPGLAIVSGVPDLATLSEQDQPAPSAYVVYLGDETGTGADHQGGQRAIQTVGQQWAVVLVVHYADSSNSGEGARREAGPLLGRLVKALTGWAPAIDVAPLARSARQSPATYASGYLYFPLVFTARFVYPRIKSWKP
Entity 4 polymer
| 描述 description | Virion structural protein |
| 分子量 formula_weight | 26983.7 kDa |
| 来源方法 src_method | nat |
| 拷贝数 entity_count | 6 |
聚合体 Polymer
| 聚合体类型 type | polypeptide(L) |
| 链编号 strand_id | qj,qk,ql,qm,qn,qo |
MAQETYFYGQGEIDAAPIVNGVLGKWRWIQDVSAMSIQLAVEKVEHKESYSGQKALVRSFPIGKTATVNITLHSIGPDNLALTLYGKVVAKAAGSVTGEVLPADLVAGDVIRLANFGVSELVITDSASSPAPLDPQYYALRADGAYGEVQLLGLPTPAPTQPFKAAYEYAATKQVGMFTAPQPTVALRYKGINLAEGGAPVIVELYKVATDPLQELALISDGNTVAGMQISGGILLDTSKPDTGDLGRFGRIIQLG
Entity 5 polymer
| 描述 description | Portal protein |
| 分子量 formula_weight | 57791.3 kDa |
| 来源方法 src_method | nat |
| 拷贝数 entity_count | 12 |
聚合体 Polymer
| 聚合体类型 type | polypeptide(L) |
| 链编号 strand_id | qp,qr,qt,qv,qx,qz,qB,qD,qF,qH,qJ,qL |
MAQIVDVYGNPIRTQQLREPQTSRLAGLAKEFAQHPAKGLTPAKLARILVEAEQGNLQAQAELFMDMEERDAHLFAEMSKRKRAILGLDWAVEPPRNASAAEKADADYLHELLLDLEGLEDLLLDALDGIGHGYSCIELEWALQGREWMPLAFHHRPQSWFQLNPEDQNELRLRDNSPAGEALQPFGWIIHRPRARSGYVARSGLFRVLAWPYLFRHYATSDLAEMLEIYGLPIRLGKYPPGTADEEKATLLRAVTGLGHAAAGIIPETMAIDFQQAAQGSSDPFLAMMRQSEDAISKAVLGGTLTSTTSQSGGGAFALGQVHNEVRHDLLASDARQLAATLSRDLLWPLLVLNRPGSPDVRRAPRLVFDLREQADITSMAQSIPALVNVGLEIPSAWVYDKLGIPQPAKNEPVLRSAAQPAILSRQHGQRVAALATIVGPRYGDQQALDKALASLPAKDMQDQVNDLLAPLLEAVNRGDSETELLGALAEAFPDMDDSALTDALHRLLFAADTWGRLHGNLDRID
Entity 6 polymer
| 描述 description | DUF1320 domain-containing protein |
| 分子量 formula_weight | 15155.2 kDa |
| 来源方法 src_method | nat |
| 拷贝数 entity_count | 12 |
聚合体 Polymer
| 聚合体类型 type | polypeptide(L) |
| 链编号 strand_id | qq,qs,qu,qw,qy,qA,qC,qE,qG,qI,qK,qM |
MSYCTLADLIEQYSEQKIREVSDRVNKPATTIDTVIVDRAIADADSEIDLHLHGRYQLPLASVPTALKRIACGLAYANLHIVLKEENPVYKTAEHLRKLLSGIANGKLSLALDADGKPAPVANTVQISEGRNDWGADW
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7. 引用文献 (2)
Structure and replication of Pseudomonas aeruginosa phage JBD30.
Embo J. (2024)
Structure and replication of Pseudomonas aeruginosa phage JBD30
Embo J. (2024)
DOI: 10.1038/s44318-024-0
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8. 文件与曲线 (0)
该条目暂无文件或曲线数据。