8t56

Structure of mechanically activated ion channel OSCA1.2 in peptidiscs

Method: ELECTRON MICROSCOPY D_max: 129.6 Å Quality: GOOD

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

下载 Download SAXS (.dat) P(r) (.pr.out) CIF

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1. 结构基本信息 1. Structure Basics

条目编号 entry_id	8t56
沉积日期 deposition_date	2023-06-12
结构标题 title	Structure of mechanically activated ion channel OSCA1.2 in peptidiscs
关键词 keywords	mechanically activated ion channel, MEMBRANE PROTEIN; MEMBRANE PROTEIN
实验方法 method	ELECTRON MICROSCOPY

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2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier	39.57 Å
回转半径 Rg (电子) rg_electron	38.94 Å
零角强度 I(0) i0	355175000.00
分子量 molecular_weight	184650.0 kDa
排除体积 excluded_volume	243890 Å³
包络体积 envelope_volume	313690 Å³
水化壳体积 shell_volume	65863 Å³
包络直径 envelope_diameter	137.5 Å
壳层 Rg shell_rg	45.63 Å
包络 Rg envelope_rg	38.77 Å
形状 Rg shape_rg	38.95 Å
总 Rg total_rg	39.36 Å
总原子数 total_atoms	13096
残基数 n_residues	1498
球谐函数阶数 n_harmonics	20
q 范围 q_range	— – 0.5000 Å⁻¹
数据点数 n_points	101
壳层类型 shell_type	directional
溶剂电子密度 solvent_density	0.3340 e/Å³
壳层衬度 contrast_shell	0.0300 e/Å³
CRYSOL 版本 crysol_version	4.1.3

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3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax	129.6 Å
Rg (实空间) rg_real	39.49 Å
Rg 误差 (实空间) rg_real_error	0.86 Å
I(0) (实空间) i0_real	3.5520e+08
I(0) 误差 (实空间) i0_real_error	5.6880e+06
Rg (倒空间) rg_reciprocal	39.54 Å
I(0) (倒空间) i0_reciprocal	355200000.0000
解质量估计 total_estimate	0.8802
解质量评级 solution_quality	GOOD a GOOD solution
P(r) 峰数 n_peaks	1
主峰位置 r_peak_primary	45.3 Å
偏度 Skewness skewness	0.311
峰度 Kurtosis kurtosis	-0.302
角度范围 angular_range	— – 0.2000 Å⁻¹
当前正则化参数 α current_alpha	0.0000
最高正则化参数 α highest_alpha	53840000.0000
实空间数据点数 n_real_points	41
GNOM 版本 gnom_version	4.1.3
质量判据 quality_criteria	AN1: 0.000; Oscil: 0.873; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.820

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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合体信息 (6)

Entity 1 polymer

描述 description	Calcium permeable stress-gated cation channel 1
分子量 formula_weight	89031.7 kDa
来源方法 src_method	man
拷贝数 entity_count	2

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	A,B
原子数 atom_count	13096

MATLQDIGVSAGINILSAFVFFIIFAVLRLQPFNDRVYFSKWYLKGLRSSPARGGAFAQRFVNLDFRSYMKFLNWMPEALKMPEPELIDHAGLDSVVYLRIYWLGLKIFTPIAVLAWAVLVPVNWTNNTLEMAKQLRNVTSSDIDKLSVSNIPEYSMRFWTHIVMAYAFTIWTCYVLMKEYETIANMRLQFVASEARRPDQFTVLVRNVPPDADESVSELVEHFFLVNHPDHYLTHQVVCNANKLADLVKKKKKLQNWLDYYQLKYARNNSQRIMVKLGFLGLWGQKVDAIEHYIAEIDKISKEISKEREEVVNDPKAIMPAAFVSFKTRWAAAVCAQTQQTRNPTQWLTEWAPEPRDVFWSNLAIPYVSLTVRRLIMHVAFFFLTFFFIVPIAFVQSLATIEGIVKAAPFLKFIVDDKFMKSVIQGFLPGIALKLFLAFLPSILMIMSKFEGFTSISSLERRAAFRYYIFNLVNVFLASVIAGAAFEQLNSFLNQSANQIPKTIGVAIPMKATFFITYIMVDGWAGVAGEILMLKPLIMFHLKNAFLVKTDKDREEAMDPGSIGFNTGEPRIQLYFLLGLVYAPVTPMLLPFILVFFALAYIVYRHQIINVYNQEYESAAAFWPDVHGRVIAALVISQLLLMGLLGTKHAALAAPFLIALPVLTIGFHHFCKGRYEPAFIRYPLQEAMMKDTLETAREPNLNLKGYLQNAYVHPVFKGDEDDYDIDDKLGKFEDEAIIVPTKRQSRRNTPAPSIISGDDSPSLPFSGKLVGTGTLEVLFQ

来源 Source

来源生物 organism	Arabidopsis thaliana
通用名 common_name	thale cress
NCBI 分类编号 ncbi_taxonomy_id	3702
宿主生物 host_organism	Homo sapiens

Entity 2 polymer

描述 description	NSPr peptide
分子量 formula_weight	4482.1 kDa
来源方法 src_method	syn
拷贝数 entity_count	8

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	C,D,E,F,G,H,I,J

FAEKFKEAVKDYFAKFWDPAAEKLKEAVKDYFAKLWD

Entity 3 non-polymer

描述 description	CHOLESTEROL HEMISUCCINATE
分子量 formula_weight	486.7 kDa
来源方法 src_method	syn
拷贝数 entity_count	2

Entity 4 non-polymer

描述 description	PALMITIC ACID
分子量 formula_weight	256.4 kDa
来源方法 src_method	syn
拷贝数 entity_count	26

Entity 5 non-polymer

描述 description	1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine
分子量 formula_weight	760.1 kDa
来源方法 src_method	syn
拷贝数 entity_count	2

Entity 6 non-polymer

描述 description	CHOLESTEROL
分子量 formula_weight	386.7 kDa
来源方法 src_method	syn
拷贝数 entity_count	6

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7. 引用文献 (1)

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分辨率 resolution	2.80 Å
分辨率测定方法 resolution_method	—
颗粒数 num_particles	52250

fit	/app/data/saxs_computation/t5/8t56/8t56.fit
pddf	/app/data/pr_computation/t5/8t56/8t56.pr.out
profile	/app/data/saxs_computation/t5/8t56/8t56.dat

Structure of mechanically activated ion channel OSCA1.2 in peptidiscs

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

1. 结构基本信息 1. Structure Basics

2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

4. 晶体学与实验 4. Crystallography & Experiment

冷冻电镜 EM 3D

5. 实体与聚合体信息 (6)

Entity 1 polymer

聚合体 Polymer

来源 Source

Entity 2 polymer

聚合体 Polymer

Entity 3 non-polymer

Entity 4 non-polymer

Entity 5 non-polymer

Entity 6 non-polymer

7. 引用文献 (1)

8. 文件与曲线 (10)

Files (7)

Curves (3)