Rhesus macaque ITS110.01 Fab in complex with SIV Env MPER peptide

条目编号 entry_id	9bp1
沉积日期 deposition_date	2024-05-06
结构标题 title	Rhesus macaque ITS110.01 Fab in complex with SIV Env MPER peptide
关键词 keywords	Fab, MPER, membrane-proximal external region, HIV-1, gp41, IMMUNE SYSTEM, SIV, antibody, IMMUNE SYSTEM-Viral protein complex; IMMUNE SYSTEM/Viral protein
实验方法 method	X-RAY DIFFRACTION

回转半径 Rg (Guinier) rg_guinier	37.68 Å
回转半径 Rg (电子) rg_electron	37.49 Å
零角强度 I(0) i0	146209000.00
分子量 molecular_weight	96677.0 kDa
排除体积 excluded_volume	120610 ų
包络体积 envelope_volume	166430 ų
水化壳体积 shell_volume	38081 ų
包络直径 envelope_diameter	121.8 Å
壳层 Rg shell_rg	41.87 Å
包络 Rg envelope_rg	36.99 Å
形状 Rg shape_rg	37.46 Å
总 Rg total_rg	37.89 Å
总原子数 total_atoms	13470
残基数 n_residues	878
球谐函数阶数 n_harmonics	20
q 范围 q_range	— – 0.5000 Å−1
数据点数 n_points	101
壳层类型 shell_type	directional
溶剂电子密度 solvent_density	0.3340 e/ų
壳层衬度 contrast_shell	0.0300 e/ų
CRYSOL 版本 crysol_version	4.1.3

最大尺寸 Dmax dmax	119.8 Å
Rg (实空间) rg_real	37.83 Å
Rg 误差 (实空间) rg_real_error	0.76 Å
I(0) (实空间) i0_real	1.4620e+08
I(0) 误差 (实空间) i0_real_error	2.1890e+06
Rg (倒空间) rg_reciprocal	37.75 Å
I(0) (倒空间) i0_reciprocal	146200000.0000
解质量估计 total_estimate	0.6447
解质量评级 solution_quality	REASONABLE a REASONABLE solution
P(r) 峰数 n_peaks	1
主峰位置 r_peak_primary	34.2 Å
偏度 Skewness skewness	0.292
峰度 Kurtosis kurtosis	-0.751
角度范围 angular_range	— – 0.2100 Å−1
当前正则化参数 α current_alpha	0.0000
最高正则化参数 α highest_alpha	14230000.0000
实空间数据点数 n_real_points	43
GNOM 版本 gnom_version	4.1.3
质量判据 quality_criteria	AN1: 0.000; Oscil: 0.934; Stabil: 1.000; Sysdev: 0.020; Positv: 1.000; Valcen: 0.907; Smooth: 0.609

晶胞参数 Unit Cell

晶胞边长 a length_a	210.174 Å
晶胞边长 b length_b	210.174 Å
晶胞边长 c length_c	46.175 Å
晶胞夹角 α angle_alpha	90.00 °
晶胞夹角 β angle_beta	90.00 °
晶胞夹角 γ angle_gamma	120.00 °
晶胞分子数 Z z_pdb	12

对称性 Symmetry

空间群 space_group	P 62
空间群编号 int_tables_number	171
晶系 crystal_system	—

精修参数 Refinement

分辨率 resolution	3.580 Å
最低分辨率 resolution_low	39.720 Å
R 因子 r_factor	0.2226
R_work r_work	0.2202
R_free r_free	0.2684

衍射实验 Diffraction

实验温度 temperature

100.0 K

Files (7)

• pr_distribution /app/data/pr_computation/bp/9bp1/pr_distribution.json
• pr_output /app/data/pr_computation/bp/9bp1/9bp1.pr.out
• pr_plot /app/data/visualization/pr_computation/bp/9bp1/9bp1_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/bp/9bp1/9bp1.dat
• saxs_fit /app/data/saxs_computation/bp/9bp1/9bp1.fit
• saxs_log /app/data/saxs_computation/bp/9bp1/9bp1.log
• saxs_plot /app/data/visualization/saxs_computation/bp/9bp1/9bp1_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/bp/9bp1/9bp1.fit
pddf	/app/data/pr_computation/bp/9bp1/9bp1.pr.out
profile	/app/data/saxs_computation/bp/9bp1/9bp1.dat