9g9z

Respiratory supercomplex CI1-CIII2-CIV1 (respirasome) from alphaproteobacterium

Method: ELECTRON MICROSCOPY D_max: 230.6 Å Quality: EXCELLENT

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

下载 Download SAXS (.dat) P(r) (.pr.out) CIF

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1. 结构基本信息 1. Structure Basics

条目编号 entry_id	9g9z
沉积日期 deposition_date	2024-07-25
结构标题 title	Respiratory supercomplex CI1-CIII2-CIV1 (respirasome) from alphaproteobacterium
关键词 keywords	;Supercomplex, multi-subunit membrane protein complex, electron transport chain, native purification, respiration, ELECTRON TRANSPORT ;; ELECTRON TRANSPORT
实验方法 method	ELECTRON MICROSCOPY

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2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier	84.57 Å
回转半径 Rg (电子) rg_electron	83.83 Å
零角强度 I(0) i0	11324100000.00
分子量 molecular_weight	978920.0 kDa
排除体积 excluded_volume	1252300 Å³
包络体积 envelope_volume	1782200 Å³
水化壳体积 shell_volume	180030 Å³
包络直径 envelope_diameter	304.8 Å
壳层 Rg shell_rg	79.78 Å
包络 Rg envelope_rg	82.11 Å
形状 Rg shape_rg	83.83 Å
总 Rg total_rg	83.78 Å
总原子数 total_atoms	68831
残基数 n_residues	8391
球谐函数阶数 n_harmonics	20
q 范围 q_range	— – 0.5000 Å⁻¹
数据点数 n_points	101
壳层类型 shell_type	directional
溶剂电子密度 solvent_density	0.3340 e/Å³
壳层衬度 contrast_shell	0.0300 e/Å³
CRYSOL 版本 crysol_version	4.1.3

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3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax	230.6 Å
Rg (实空间) rg_real	80.63 Å
Rg 误差 (实空间) rg_real_error	0.81 Å
I(0) (实空间) i0_real	1.0860e+10
I(0) 误差 (实空间) i0_real_error	1.9690e+08
Rg (倒空间) rg_reciprocal	82.13 Å
I(0) (倒空间) i0_reciprocal	11240000000.0000
解质量估计 total_estimate	0.9153
解质量评级 solution_quality	EXCELLENT a EXCELLENT solution
P(r) 峰数 n_peaks	1
主峰位置 r_peak_primary	89.7 Å
偏度 Skewness skewness	0.318
峰度 Kurtosis kurtosis	-0.658
角度范围 angular_range	— – 0.0900 Å⁻¹
当前正则化参数 α current_alpha	0.8718
最高正则化参数 α highest_alpha	348900000.0000
实空间数据点数 n_real_points	19
GNOM 版本 gnom_version	4.1.3
质量判据 quality_criteria	AN1: 0.000; Oscil: 0.999; Stabil: 0.976; Sysdev: 1.000; Positv: 1.000; Valcen: 0.972; Smooth: 0.001

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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合体信息 (47)

Entity 1 polymer

描述 description	NADH-quinone oxidoreductase subunit A
分子量 formula_weight	13686.1 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	A
原子数 atom_count	68831

MEYLLQEYLPILVFLGMASALAIVLILAAAVIAVRNPDPEKVSAYECGFNAFDDARMKFDVRFYLVSILFIIFDLEVAFLFPWAVSFASLSDVAFWGMMVFLAVLTVGFAYEWKKGALEWA

Entity 2 polymer

描述 description	NADH-quinone oxidoreductase subunit B
分子量 formula_weight	19525.5 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	B

MMTGLNTAGADRDLATAELNRELQDKGFLLTTTEDIINWARNGSLHWMTFGLACCAVEMMQTSMPRYDLERFGTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQRRIRRTGTLVR

Entity 3 polymer

描述 description	NADH-quinone oxidoreductase subunit C
分子量 formula_weight	23920.1 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	C

MSEALSDEALLELAEHIALRRENDVISTQVAFGELTVNATLSGVIGLIEFLRNDPNCRFSTLIDITAVDNPARPARFDVVYHLLSMYQNQRIRVKVQVREDELVPSLIGVFPGANWYEREVFDLFGILFSGHSDLRRILTDYGFRGHPLRKDFPTTGYVEVRWSDIEKRVVYEPVNLVQEYRQFDFLSPWEGAKYVLPGDEKAPEAKK

Entity 4 polymer

描述 description	NADH-quinone oxidoreductase subunit D
分子量 formula_weight	46811.5 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	D

MDGDIRKNSYDDGSMDALTGEQSIRNFNINFGPQHPAAHGVLRMVLELDGEIVERADPHIGLLHRGTEKLMESRTYLQNLPYLDRLDYVAPMNQEHAWCLAIERLTGTVIPRRASLIRVLYSEIGRILNHLMGVTTGAMDVGALTPPLWGFEAREELMIFYERACGARLHAAYFRPGGVHQDLPPDLLDDIEEWCERFPKLVDDLDTLLTENRIFKQRLVDIGIVTEADALDWGYTGVMVRGSGLAWDLRRSQPYECYDEFDFQIPVGRNGDCYDRYLCRMAEMRESCKIMQQAVQKLRAEPAGDVLARGKLTPPRRAEMKRDMESLIHHFKLYTEGFKVPAGEVYAAVEAPKGEFGVYLVADGTNKPWRAKLRAPGFAHLQSIDWMSRGHMLADVPAIIATLDIVFGEVDR

Entity 5 polymer

描述 description	NADH dehydrogenase subunit E
分子量 formula_weight	26145.9 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	E

MLRRLSPIQPDSFEFTPANLEWARAQMTKYPEGRQQSAIIPVLWRAQEQEGWLSRPAIEYCADLLGMPYIRALEVATFYFMFQLQPVGSVAHIQICGTTTCMICGAEDLIRVCKEKIAPEPHALSADGRFSWEEVECLGACTNAPMAQIGKDFYEDLTVEKLAALIDRFAAGEVPVPGPQNGRFSAEALGGPTALADLKGGEAHNASVARALRLGDSIKRIDGTEVPITTPWLATQNGV

Entity 6 polymer

描述 description	NADH-quinone oxidoreductase subunit F
分子量 formula_weight	47281.1 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	F

MLNDQDRIFTNLYGMGDRSLAGAKKRGHWDGTAAIIQRGRDKIIDEMKASGLRGRGGAGFPTGMKWSFMPKESDGRPSYLVINADESEPATCKDREIMRHDPHTLIEGALIASFAMGAHAAYIYIRGEFIREREALQAAIDECYDAGLLGRNAAGSGWDFDLYLHHGAGAYICGEETALLESLEGKKGMPRMKPPFPAGAGLYGCPTTVNNVESIAVVPTILRRGAEWFASFGRPNNAGVKLFGLTGHVNTPCVVEEAMSIPMRELIEKHGGGIRGGWKNLKAVIPGGASCPVLTAEQCENAIMDYDGMRELRSSFGTACMIVMDQSTDVVKAIWRLSKFFKHESCGQCTPCREGTGWMMRVMERLVRGDAEVEEIDMLFDVTKQVEGHTICALGDAAAWPIQGLIRNFREEIEDRIKAKRTGRMGAMAAE

Entity 7 polymer

描述 description	NADH-quinone oxidoreductase
分子量 formula_weight	73289.4 kDa
EC 编号 ec_number	7.1.1.-
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	G

MADLRKIKIDDTIIEVDPNMTLIQACEMAGIEVPRFCYHERLSIAGNCRMCLVEVVGGPPKPAASCAMQVKDLRPGPEGAPSEIRTNSPMVKKAREGVMEFLLINHPLDCPICDQGGECDLQDQAMAYGVDFSRYREPKRATEDLNLGPLVETHMTRCISCTRCVRFTTEVAGITQMGQTGRGEDSEITSYLNQTLESNMQGNIIDLCPVGALVSKPYAFTARPWELTKTESIDVMDALGSSIRIDTKGREVMRILPRNHDGVNEEWISDKTRFVWDGLRRQRLDRPYIRENGRLRPASWPEALEAAARAMKGKKIAGLIGDLVPAEAAFSLKQLVEGLGGKVECRVDGARLPAGNRSAYVGTARIEDIDDAEMIQLIGTNPRDEAPVLNARIRKAWSKGAKVGLVGEPVDLTYDYAHVGTDRAALESLSSREISDETKARPSIVIVGQGAIREADGEAVLAHAMKLAENSNSGLLILHTAAGRVGAMDVGAVTEGGLLAAIDGAEVVYNLGADEVDIDQGPFVIYQGSHGDRGAHRADIILPGACYTEESGLFVNTEGRPQLAMRANFAPGEGKENWAILRALSAELGATQPWDSLAGLRRKLVEAVPHLAQIDQVPQNEWQPLGRFDLGQASFRYAIRDFYLTNPIARSSPLMGELSAMAAARKAPAPLAAE

Entity 8 polymer

描述 description	NADH-quinone oxidoreductase subunit H
分子量 formula_weight	38861.2 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	H

MAEFWASPYGFALSMLLQGLAVIAFVMGSLIFMVYGDRKIWAAVQMRRGPNVVGPWGLLQTFADALKYIVKEIVIPAGADKFVYFLAPFLSMMLALFAFVVIPFDEGWVMANINVGILFIFAASSLEVYGVIMGGWASNSKYPFLASLRSAAQMISYEVSLGLIIIGIIISTGSMNLTAIVEAQRGDYGLLNWYWLPHLPMVVLFFVSALAECNRPPFDLVEAESELVAGFMTEYSSTPYLLFMAGEYIAMYLMCALLSLLFFGGWLSPVPFIADGWWWMVIKMWFWFYMFAMVKAIVPRYRYDQLMRIGWKVFLPLSLGWVVLVAILARYEILGGFWARFAVGG

Entity 9 polymer

描述 description	NADH-quinone oxidoreductase subunit I
分子量 formula_weight	18925.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	I

MAFDFARATKYFLMWDFIKGFGLGMRYFVSPKPTLNYPHEKGPLSPRFRGEHALRRYPNGEERCIACKLCEAVCPAQAITIDAEPREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYATETREELFYDKQKLLANGERWEAEIARNLQLDAPYR

Entity 10 polymer

描述 description	NADH-quinone oxidoreductase subunit J
分子量 formula_weight	21732.0 kDa
EC 编号 ec_number	7.1.1.-
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	J

MTFAFYLFAISACVAGFMVVIGRNPVHSVLWLILAFLSAAGLFVLQGAEFVAMLLVVVYVGAVAVLFLFVVMMLDVDFAELKGELARYLPLALVIGVVLLAQLGIAFSGWTPSDQAESLRAAPVDAAVENTLGLGLVLYDRYVLMFQLAGLVLLVAMIGAIVLTMRHRKDVKRQNVLEQMWRDPAKTMELKDVKPGQGL

Entity 11 polymer

描述 description	NADH-quinone oxidoreductase subunit K
分子量 formula_weight	10863.1 kDa
EC 编号 ec_number	7.1.1.-
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	K

MIGLTHYLVVGAILFVTGIFGIFVNRKNVIVILMSIELMLLAVNINFVAFSTHLGDLAGQVFTMFVLTVAAAEAAIGLAILVVFFRNRGTIAVEDVNVMKG

Entity 12 polymer

描述 description	NADH dehydrogenase subunit L
分子量 formula_weight	77839.4 kDa
EC 编号 ec_number	1.6.5.3
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	L

MEKFVLFAPLIASLIAGLGWRAIGEKAAQYLTTGVLFLSCLISWYLFLSFDGVPRHIPVLDWVVTGDFHAEWAIRLDRLTAIMLIVVTTVSALVHMYSLGYMAHDDNWTHDEHYKARFFAYLSFFTFAMLMLVTADNLLQMFFGWEGVGVASYLLIGFYYKKASANAAAMKAFIVNRVGDFGFLLGIFGIYWLTGSVQFDEIFRQVPQLAQTEMHFLWRDWNAANLLGFLLFVGAMGKSAQLLLHTWLPDAMEGPTPVSALIHAATMVTAGVFLVCRMSPLYEFAPDAKNFIVIIGATTAFFAATVGLVQNDIKRVIAYSTCSQLGYMFVAAGVGVYSAAMFHLLTHAFFKAMLFLGAGSVIHAMHHEQDMRNYGGLRKKIPLTFWAMMIGTFAITGVGIPLTHLGFAGFLSKDAIIESAYAGSGYAFWLLVIAACFTSFYSWRLIFLTFYGKPRGDHHAHDHAHESPPVMTIPLGVLAIGAVFAGMVWYGPFFGDHHKVTEYFHIAGAHHEAAEGEEAEHATAEAPVEHAVADTATAEGEAAAEAEHAEIAAPVGGAIYMHPDNHIMDEAHHAPAWVKVSPFVAMVLGLITAWTFYIANPSLPRRLAAQQPALYRFLLNKWYFDEIYEFIFVRPAKWLGRVLWKGGDGAVIDGTINGVAMGLIPRLTRAAVRVQSGYLFHYAFAMVLGIVGLLIWVMMRGAH

Entity 13 polymer

描述 description	NADH dehydrogenase subunit M
分子量 formula_weight	56547.9 kDa
EC 编号 ec_number	1.6.5.3
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	M

MTNLLSIITFLPIVAAIIMALFLRGQDEAAARNAKWLALLTTTATFVISLFVLFRFDPANTGFQFVEDHAWIMGLRYKMGVDGISVLFVLLTTFMMPLTILSTWQVQDKVKEYMIAFLVLEGLMIGVFTALDLVLFYLFFEAGLIPMFLIIGIWGGKDRIYASFKFFLYTFLGSVLMLVAMIAMYRMAGTTDIPTLLTFDFPSENFRLLGMTVVGGMQMLLFLAFFASFAVKMPMWPVHTWLPDAHVQAPTAGSVLLAAVLLKMGGYGFLRFSLPMFPVASGVAQPYVFWLSAIAIVYTSLVALAQSDMKKVIAYSSVAHMGYVTMGVFAANQIGVDGAIFQMLSHGFISGALFLCVGVIYDRMHTREIDAYGGLVNRMPAYAAVFMFFTMANVGLPGTSGFVGEFLTLMGVFRVDTWVALVATSGVILSAAYALWLYRRVTLGQLIKESLKSITDMTPRERWVFIPLIAMTLILGVYPRLVTDVTGPAVAALVQDYNQSQPAAPVATAQASH

Entity 14 polymer

描述 description	NADH-quinone oxidoreductase subunit N
分子量 formula_weight	52564.8 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	N

MTSLDFSTILPEVVLAGYALAALMAGAYLGKDRLARTLLWVTVAAFLVVAAMVGLGNHVDGAAFHGMFIDDGFSRFAKVVTLVAAAGVLAMSADYMQRRNMLRFEFPIIVALAVLGMMFMVSAGDLLTLYMGLELQSLALYVVAAMRRDSVRSSEAGLKYFVLGSLSSGLLLYGASLVYGFAGTTGFEGIISTIEAGHLSLGVLFGLVFMLVGLSFKVSAVPFHMWTPDVYEGSPTPVTAFFATAPKVAAMALIARLVFDAFGHVIGDWSQIVAALAVMSMFLGSIAGIGQTNIKRLMAYSSIAHMGFALVGLAAGTAIGVQNMLLYMTIYAVMNIGTFAFILSMERDGVPVTDLAALNRFAWTDPVKALAMLVLMFSLAGVPPTLGFFAKFGVLTAAVDAGMGWLAVLGVIASVIGAFYYLRIVYYMYFGGESEGMTSRMGAVQYLALMVPALAMLVGAISMFGVDSAAGRAAETLVGPVAAIEQPAEAAQAEPVQGE

Entity 15 polymer

描述 description	NAD-dependent epimerase/dehydratase
分子量 formula_weight	35386.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	P

MSAAKLVTIYGGSGFLGRQIARTMAAQGWRIRVAVRRPNEAGVVRTYGAPGQVEPVPCNVRDDLSVTACMADADAVINCVGIMVREGKNTFDAIHEEAAGRIARIAAETGVKRFVHVSAIGADPDSASRYAASKGRGEAAVLAHRPDAMILRPSVIFGPDDHFYNRIASMTRLGPILFVPGANTLMQPVYVEDVARAAAMGAEGTAQPGIYELGGPDMLTMREVAQQVLVAIDRRRAIVGLPHWLARVTGSALDLVQAATGGLLTNRILTRDQARLLRLPNRVSGEVKTFADLDIEPTAAPAVIADYLWRFRSSGQYEAITASAKNLRNS

Entity 16 polymer

描述 description	ETC complex I subunit conserved region
分子量 formula_weight	12048.4 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	Q

MRVRIYKPARNAMQSGTARTRNWVLDFPPADPRAIDPLMGWTSSDDTQSQVRLRFETRKQAEDYAREHGLDYEVIEPHTRAANIRPRGYGENFASDRRAPWTH

Entity 17 polymer

描述 description	Zinc finger CHCC-type domain-containing protein
分子量 formula_weight	7069.9 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	R

MTIPAPEIQTVTSWKVACDGDEARGLGHPRVWLAIPRDTGWVECGYCDKRFVIDREHAHDDH

Entity 18 polymer

描述 description	Protein-L-isoaspartate O-methyltransferase
分子量 formula_weight	23528.9 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	Z

MTDFAQRRTMMVDTQVRPNEVTSYPVIEAMLNVPREQFVPESRRDVAYVGNNIDLAPGRVLLEPRTLGKMMDILNLQNGDLVLDVGCGYGYSAAVMARIAEAVVAVEEDAAMAAEAEGRLAAQDVFNVAVVQGALAEGCPGQAPYDAILIEGAVEQVPEALTEQLREGGRIVALFREGNLGIVRLGHKLDGRVNWRFAFNAVAPLLPGFARPRGFVL

Entity 19 polymer

描述 description	Cytochrome b
分子量 formula_weight	50154.7 kDa
来源方法 src_method	nat
拷贝数 entity_count	2

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	a,d

MAGIPHDHYEPKTGFERWLHRRLPIVSLVYDTLMIPTPKNLNWWWIWGIVLAFCLVLQIATGIVLVMHYTPHVDLAFASVEHIMRDVNGGYMLRYLHANGASLFFLAVYIHIFRGLYYGSYKAPREVTWIVGMLIYLMMMGTAFMGYVLPWGQMSFWGATVITGLFGAIPGVGEAIQTWLLGGPAVDNPTLNRFFSLHYLLPFVIAALVVVHIWAFHTTGNNNPTGVEVRRGSKEEAKKDTLPFWPYFVIKDLFALAVVLVVFFAIVGFMPNYLGHPDNYIEANPLVTPAHIVPEWYFLPFYAILRAFTADVWVVMLVNWLSFGIIDAKFFGVIAMFGAILVMALVPWLDTSRVRSGQYRPLFKWWFWLLAVDFVVLMWVGAMPAEGIYPYIALAGSAYWFAYFLIILPLLGIIEKPDAMPQTIEEDFNAHYGPETHPAE

Entity 20 polymer

描述 description	Cytochrome c1
分子量 formula_weight	46904.3 kDa
来源方法 src_method	nat
拷贝数 entity_count	2

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	b,e

MTLRNASLTAVAALTVALAGGAVAQDASTAPGTTAPAGSSYHTNEAAPAAADTAPAAEAADEPAAEEAEAGEAEVTEEPAATETPAEEPAADEPAATEEPDAEAEPAAEEAQATTEEAPAEEPAAEEPAAEEPAEEPAADAPAEEAAAEEAPAEPEAAAEEPAAEEPEATEEEAPAEEAAAEEAPAEEVVEDEAAADHGDAAAQEAGDSHAAAHIEDISFSFEGPFGKFDQHQLQRGLQVYTEVCSACHGLRYVPLRTLADEGGPQLPEDQVRAYAANFDITDPETEEDRPRVPTDHFPTVSGEGMGPDLSLMAKARAGFHGPYGTGLSQLFNGIGGPEYIHAVLTGYDGEEKEEAGAVLYHNAAFAGNWIQMAAPLSDDQVTYEDGTPATVDQMATDVAAFLMWTAEPKMMDRKQVGFVSVIFLIVLAALLYLTNKKLWQPIKHPRKPE

Entity 21 polymer

描述 description	Ubiquinol-cytochrome c reductase iron-sulfur subunit
分子量 formula_weight	20889.2 kDa
EC 编号 ec_number	7.1.1.8
来源方法 src_method	nat
拷贝数 entity_count	2

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	c,f

MEIKPVSHADEHAGDHGATRRDFLYYATAGAGTVAAGAAAWTLVNQMNPSADVQALASIQVDVSGVETGTQLTVKWLGKPVFIRRRTEDEIQAGREVDLGQLIDRSAQNSNKPDAPATDENRTMDEAGEWLVMIGVCTHLGCVPIGDGAGDFGGWFCPCHGSHYDTSGRIRRGPAPQNLHIPVAEFLDDTTIKLG

Entity 22 polymer

描述 description	Cytochrome c oxidase subunit 1
分子量 formula_weight	62486.6 kDa
EC 编号 ec_number	7.1.1.9
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	g

MADAAVHGHGDHHDTRGFFTRWFMSTNHKDIGILYLFTAGIVGLISVCFTVYMRMELQHPGVQYMCLEGARLIADASAECTPNGHLWNVMITYHGVLMMFFVVIPALFGGFGNYFMPLHIGAPDMAFPRLNNLSYWMYVCGVALGVASLLAPGGNDQMGSGVGWVLYPPLSTTEAGYSMDLAIFAVHVSGASSILGAINIITTFLNMRAPGMTLFKVPLFAWSVFITAWLILLSLPVLAGAITMLLMDRNFGTQFFDPAGGGDPVLYQHILWFFGHPEVYIIILPGFGIISHVISTFAKKPIFGYLPMVLAMAAIGILGFVVWAHHMYTAGMSLTQQAYFMLATMTIAVPTGIKVFSWIATMWGGSIEFKTPMLWAFGFLFLFTVGGVTGVVLSQAPLDRVYHDTYYVVAHFHYVMSLGAVFGIFAGVYYWIGKMSGRQYPEWAGQLHFWMMFIGSNLIFFPQHFLGRQGMPRRYIDYPVEFAYWNNISSIGAYISFASFLFFIGIVFYTLFAGKRVNVPNYWNEHADTLEWTLPSPPPEHTFETLPKREDWDRAHAH

Entity 23 polymer

描述 description	Cytochrome c oxidase subunit 2
分子量 formula_weight	32563.6 kDa
EC 编号 ec_number	7.1.1.9
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	h

MMAIATKRRGVAAVMSLGVATMTAVPALAQDVLGDLPVIGKPVNGGMNFQPASSPLAHDQQWLDHFVLYIITAVTIFVCLLLLICIVRFNRRANPVPARFTHNTPIEVIWTLVPVLILVAIGAFSLPILFRSQEMPNDPDLVIKAIGHQWYWSYEYPNDGVAFDALMLEKEALADAGYSEDEYLLATDNPVVVPVGKKVLVQVTATDVIHAWTIPAFAVKQDAVPGRIAQLWFSVDQEGVYFGQCSELCGINHAYMPIVVKAVSQEKYEAWLAGAKEEFAADASDYLPASPVKLASAE

Entity 24 polymer

描述 description	cytochrome-c oxidase
分子量 formula_weight	30833.2 kDa
EC 编号 ec_number	7.1.1.9
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	i

MAHVKNHDYQILPPSIWPFFGAIGAFVMLTGAVAWMKGITFFGLPVEGPWMFLIGLVGVLYVMFGWWADVVNEGETGEHTPVVRIGLQYGFILFIMSEVMFFVAWFWAFIKNALYPMGPDSPIKDGVWPPEGIVTFDPWHLPLINTLILLLSGVAVTWAHHAFVHEGDRKTTINGLIVAVILGVCFTGLQAYEYSHAAFGLADTVYAGAFYMATGFHGAHVIIGTIFLFVCLIRLLKGQMTQKQHVGFEAAAWYWHFVDVVWLFLFVVIYIWGR

Entity 25 polymer

描述 description	Aa3 type cytochrome c oxidase subunit IV
分子量 formula_weight	7351.5 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	j

MGYPCARRIASFTDRIMASHHEITDHKHGEMDIRHQQATFAGFIKGATWVSILSIAVLVFLALANS

Entity 26 polymer

描述 description	Cytochrome c, class I
分子量 formula_weight	18177.4 kDa
来源方法 src_method	nat
拷贝数 entity_count	2

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	o,p

MFDTMTVTKAAGALIGSLLFLLLMSWAASGIFHVGTSGHGAEGEEHAQAYTIPVESAGGAEGEAVDEGPDFATVLASADPAAGEKVFGKCKACHKLDGNDGVGPHLNGVVGRTVAGVDGFNYSDPMKAHGGDWTPEALQEFLTNPKAVVKGTKMAFAGLPKIEDRANLIAYLEGQQ

Entity 27 polymer

描述 description	NADH:ubiquinone oxidoreductase 17.2 kD subunit
分子量 formula_weight	14460.9 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	q

MSFLLRFLTWWNSQTLNTQVWTKLYGEKVGEDDQGNVYYQSGGGKRRWVIYNGESEASRISPEWHGWLHHTYKEPPTAAPLAHKPWEKPHEPNLTGSSGAYHPAGSLYRAQPVERRDYDAWQPE

Entity 28 non-polymer

描述 description	(1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE
分子量 formula_weight	751.0 kDa
来源方法 src_method	syn
拷贝数 entity_count	6

Entity 29 non-polymer

描述 description	;2-[2-[(1~{S},2~{S},4~{S},5'~{R},6~{R},7~{S},8~{R},9~{S},12~{S},13~{R},16~{S})-5',7,9,13-tetramethylspiro[5-oxapentacyclo[10.8.0.0^{2,9}.0^{4,8}.0^{13,18}]icos-18-ene-6,2'-oxane]-16-yl]oxyethyl]propane-1,3-diol ;
分子量 formula_weight	516.8 kDa
来源方法 src_method	syn
拷贝数 entity_count	9

Entity 30 non-polymer

描述 description	IRON/SULFUR CLUSTER
分子量 formula_weight	351.6 kDa
来源方法 src_method	syn
拷贝数 entity_count	6

Entity 31 non-polymer

描述 description	UBIQUINONE-10
分子量 formula_weight	863.3 kDa
来源方法 src_method	syn
拷贝数 entity_count	5

Entity 32 non-polymer

描述 description	CALCIUM ION
分子量 formula_weight	40.1 kDa
来源方法 src_method	syn
拷贝数 entity_count	4

Entity 33 non-polymer

描述 description	1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE
分子量 formula_weight	790.1 kDa
来源方法 src_method	syn
拷贝数 entity_count	15

Entity 34 non-polymer

描述 description	FE2/S2 (INORGANIC) CLUSTER
分子量 formula_weight	175.8 kDa
来源方法 src_method	syn
拷贝数 entity_count	4

Entity 35 non-polymer

描述 description	FLAVIN MONONUCLEOTIDE
分子量 formula_weight	456.3 kDa
来源方法 src_method	syn
拷贝数 entity_count	1

Entity 36 non-polymer

描述 description	1,2-Distearoyl-sn-glycerophosphoethanolamine
分子量 formula_weight	748.1 kDa
来源方法 src_method	syn
拷贝数 entity_count	8

Entity 37 non-polymer

描述 description	Phosphatidylinositol
分子量 formula_weight	887.1 kDa
来源方法 src_method	syn
拷贝数 entity_count	1

Entity 38 non-polymer

描述 description	O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine
分子量 formula_weight	792.1 kDa
来源方法 src_method	syn
拷贝数 entity_count	1

Entity 39 non-polymer

描述 description	1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE
分子量 formula_weight	705.0 kDa
来源方法 src_method	syn
拷贝数 entity_count	7

Entity 40 non-polymer

描述 description	ZINC ION
分子量 formula_weight	65.4 kDa
来源方法 src_method	syn
拷贝数 entity_count	2

Entity 41 non-polymer

描述 description	PROTOPORPHYRIN IX CONTAINING FE
分子量 formula_weight	616.5 kDa
来源方法 src_method	syn
拷贝数 entity_count	4

Entity 42 non-polymer

描述 description	HEME C
分子量 formula_weight	618.5 kDa
来源方法 src_method	syn
拷贝数 entity_count	2

Entity 43 non-polymer

描述 description	CARDIOLIPIN
分子量 formula_weight	1464.0 kDa
来源方法 src_method	syn
拷贝数 entity_count	1

Entity 44 non-polymer

描述 description	HEME-A
分子量 formula_weight	852.8 kDa
来源方法 src_method	syn
拷贝数 entity_count	2

Entity 45 non-polymer

描述 description	COPPER (II) ION
分子量 formula_weight	63.5 kDa
来源方法 src_method	syn
拷贝数 entity_count	1

Entity 46 non-polymer

描述 description	MANGANESE (II) ION
分子量 formula_weight	54.9 kDa
来源方法 src_method	syn
拷贝数 entity_count	1

Entity 47 non-polymer

描述 description	DINUCLEAR COPPER ION
分子量 formula_weight	127.1 kDa
来源方法 src_method	syn
拷贝数 entity_count	1

▶

7. 引用文献 (1)

▶

晶胞边长 a length_a	1.000 Å
晶胞边长 b length_b	1.000 Å
晶胞边长 c length_c	1.000 Å
晶胞夹角 α angle_alpha	90.00 °
晶胞夹角 β angle_beta	90.00 °
晶胞夹角 γ angle_gamma	90.00 °
晶胞分子数 Z z_pdb	—

空间群 space_group	P 1
空间群编号 int_tables_number	1
晶系 crystal_system	—

分辨率 resolution	4.03 Å
分辨率测定方法 resolution_method	—
颗粒数 num_particles	16429

fit	/app/data/saxs_computation/g9/9g9z/9g9z.fit
pddf	/app/data/pr_computation/g9/9g9z/9g9z.pr.out
profile	/app/data/saxs_computation/g9/9g9z/9g9z.dat

Respiratory supercomplex CI1-CIII2-CIV1 (respirasome) from alphaproteobacterium

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

1. 结构基本信息 1. Structure Basics

2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

4. 晶体学与实验 4. Crystallography & Experiment

晶胞参数 Unit Cell

对称性 Symmetry

冷冻电镜 EM 3D

5. 实体与聚合体信息 (47)

Entity 1 polymer

聚合体 Polymer

Entity 2 polymer

聚合体 Polymer

Entity 3 polymer

聚合体 Polymer

Entity 4 polymer

聚合体 Polymer

Entity 5 polymer

聚合体 Polymer

Entity 6 polymer

聚合体 Polymer

Entity 7 polymer

聚合体 Polymer

Entity 8 polymer

聚合体 Polymer

Entity 9 polymer

聚合体 Polymer

Entity 10 polymer

聚合体 Polymer

Entity 11 polymer

聚合体 Polymer

Entity 12 polymer

聚合体 Polymer

Entity 13 polymer

聚合体 Polymer

Entity 14 polymer

聚合体 Polymer

Entity 15 polymer

聚合体 Polymer

Entity 16 polymer

聚合体 Polymer

Entity 17 polymer

聚合体 Polymer

Entity 18 polymer

聚合体 Polymer

Entity 19 polymer

聚合体 Polymer

Entity 20 polymer

聚合体 Polymer

Entity 21 polymer

聚合体 Polymer

Entity 22 polymer

聚合体 Polymer

Entity 23 polymer

聚合体 Polymer

Entity 24 polymer

聚合体 Polymer

Entity 25 polymer

聚合体 Polymer

Entity 26 polymer

聚合体 Polymer

Entity 27 polymer

聚合体 Polymer

Entity 28 non-polymer

Entity 29 non-polymer

Entity 30 non-polymer

Entity 31 non-polymer

Entity 32 non-polymer

Entity 33 non-polymer

Entity 34 non-polymer

Entity 35 non-polymer

Entity 36 non-polymer

Entity 37 non-polymer

Entity 38 non-polymer

Entity 39 non-polymer

Entity 40 non-polymer

Entity 41 non-polymer

Entity 42 non-polymer