9h91

Cryo-EM structure of the Vibrio natrigens 50S ribosomal subunit in complex with the proline-rich antimicrobial peptide Bac5(1-17).

Method: ELECTRON MICROSCOPY D_max: 218.2 Å Quality: GOOD

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

下载 Download SAXS (.dat) P(r) (.pr.out) CIF

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1. 结构基本信息 1. Structure Basics

条目编号 entry_id	9h91
沉积日期 deposition_date	2024-10-29
最后修订 last_revision	2025-05-21
结构标题 title	Cryo-EM structure of the Vibrio natrigens 50S ribosomal subunit in complex with the proline-rich antimicrobial peptide Bac5(1-17).
关键词 keywords	Vibrio natriegens, Ribosome, Bac5, Bactenecin 5, 50S, V. natriegens; RIBOSOME
实验方法 method	ELECTRON MICROSCOPY

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2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier	66.55 Å
回转半径 Rg (电子) rg_electron	66.85 Å
零角强度 I(0) i0	52956100000.00
分子量 molecular_weight	1248000.0 kDa
排除体积 excluded_volume	1267900 Å³
包络体积 envelope_volume	2035100 Å³
水化壳体积 shell_volume	231770 Å³
包络直径 envelope_diameter	231.2 Å
壳层 Rg shell_rg	79.90 Å
包络 Rg envelope_rg	66.50 Å
形状 Rg shape_rg	66.86 Å
总 Rg total_rg	66.91 Å
总原子数 total_atoms	83742
残基数 n_residues	5782
球谐函数阶数 n_harmonics	20
q 范围 q_range	— – 0.5000 Å⁻¹
数据点数 n_points	101
壳层类型 shell_type	directional
溶剂电子密度 solvent_density	0.3340 e/Å³
壳层衬度 contrast_shell	0.0300 e/Å³
CRYSOL 版本 crysol_version	4.1.3

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3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax	218.2 Å
Rg (实空间) rg_real	66.12 Å
Rg 误差 (实空间) rg_real_error	1.62 Å
I(0) (实空间) i0_real	5.2960e+10
I(0) 误差 (实空间) i0_real_error	9.8070e+08
Rg (倒空间) rg_reciprocal	66.90 Å
I(0) (倒空间) i0_reciprocal	53030000000.0000
解质量估计 total_estimate	0.8614
解质量评级 solution_quality	GOOD a GOOD solution
P(r) 峰数 n_peaks	1
主峰位置 r_peak_primary	81.8 Å
偏度 Skewness skewness	0.213
峰度 Kurtosis kurtosis	-0.370
角度范围 angular_range	— – 0.1200 Å⁻¹
当前正则化参数 α current_alpha	0.0000
最高正则化参数 α highest_alpha	8475000000.0000
实空间数据点数 n_real_points	25
GNOM 版本 gnom_version	4.1.3
质量判据 quality_criteria	AN1: 0.000; Oscil: 0.827; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.945; Smooth: 0.767

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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合体信息 (32)

Entity 1 polymer

描述 description	50S ribosomal protein L32
分子量 formula_weight	6314.2 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	0
原子数 atom_count	83760

MAVQKNRKTRSKRGMRRSHDALTTAALSVDATSGETHLRHNVTAEGYYRGKKVINK

Entity 2 polymer

描述 description	50S ribosomal protein L33
分子量 formula_weight	6540.8 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	1

MAKKGVREKIRLVSSAGTGHFYTTDKNKRNMPGKFEIKKFDPVVRQHVMYKEAKIK

Entity 3 polymer

描述 description	50S ribosomal protein L34
分子量 formula_weight	5198.3 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	2

MKRTFQPTVLKRKRTHGFRARMATKNGRKVINARRAKGRARLSK

Entity 4 polymer

描述 description	50S ribosomal protein L35
分子量 formula_weight	7325.0 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	3

MPKMKTNKGAAKRFKKTAGGIKYKHATKRHILTKRTTKNKRQLRPNAILPKCEVAAVIRMLPYA

Entity 5 polymer

描述 description	50S ribosomal protein L36
分子量 formula_weight	4291.3 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	4

MKVRASVKKICRNCKVIKRNGVVRVICSEPKHKQRQG

Entity 6 polymer

描述 description	Cathelicidin-2
分子量 formula_weight	2167.6 kDa
来源方法 src_method	syn
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	9

RFRPPIRRPPIRPPFYP

Entity 7 polymer

描述 description	5S ribosomal RNA
分子量 formula_weight	38990.2 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polyribonucleotide
链编号 strand_id	B

UGCUUGGCGACCAUAGCGUUUUGGACCCACCUGACUUCCAUUCCGAACUCAGAAGUGAAACGAAAUAGCGCCGAUGGUAGUGUGGGGUUUCCCCAUGUGAGAGUAGGACAUCGCCAGGCAA

Entity 8 polymer

描述 description	50S ribosomal protein L2
分子量 formula_weight	30059.7 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	C

MAIVKCKPTSPGRRHVVKVVNADLHKGKPYAPLLEKNSKNGGRNNNGRITVRHIGGGHKHHYRVIDFKRTKDGIPATVERLEYDPNRSANIALVLYKDGERRYILAPKGVVAGDVVQSGVDAPIKAGNTLPMRNIPVGSTVHNVELKPGKGGQLARSAGAYAQIVARDGTYVTIRLRSGEMRKVLSEGRATIGEVGNSEHMLRELGKAGATRWRGVRPTVRGVVMNPVDHPHGGGEGRTSGGRHPVSPWGMPTKGYKTRKNKRTDKYIVRRRNK

Entity 9 polymer

描述 description	50S ribosomal protein L3
分子量 formula_weight	22393.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	D

MIGLIGRKVGMTRVFTEDGVSIPVTVVEVEANRVSQVKTLETDGYAAIQVTAGAKKANRVNKAEAGHFAKAGVEAGRGLWEFRLENGEEFEVGSELTVELFNETKKVDVTGTSKGKGFQGAVKRWNFRTQDMTHGNSLSHRAPGSIGQCQTPGRVFKGKKMAGHMGAERVTTQNLEIVRVDAERNLLLIKGAVPGATGGNVIVKPAVKA

Entity 10 polymer

描述 description	50S ribosomal protein L4
分子量 formula_weight	21906.2 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	E

MELMVKGADALTVSETTFGREFNEALVHQVVVAYAAGARQGTRAQKTRSEVSGGGAKPWRQKGTGRARAGTIRSPIWRSGGVTFAAKPQDHSQKVNKKMYRGAMKSILSELVRQERLIVVDNFSVEAPKTKELVAKLKELELTDALIVTSEVDENLFLAARNLYKVDARDVAGIDPVSLIAFDKVVMTAEAVKQVEEMLA

Entity 11 polymer

描述 description	50S ribosomal protein L6
分子量 formula_weight	18801.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	G

MSRVAKAPVAIPAGVEVKLNGQEITVKGAKGELTRVLNDAVVIAQEENNLTFGPKEGVVNAWAQAGTARALVNNMVVGVTEGFTKKLTLKGVGYRAAIKGNAVGLTLGFSHPVEHELPAGIKAECPSQTEIVITGADKQLVGQVAADIRSYRQPEPYKGKGVRYADENVRTKEAKKK

Entity 12 polymer

描述 description	Large ribosomal subunit protein bL9
分子量 formula_weight	15769.9 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	H

MQVILLDKIGNLGGLGDTVNVKSGYARNFLIPQGKAVMATKGNVEMFEARRAELEAKVAEQLTAAEARAEKVNALEAVVIASKAGDEGKLFGSIGTRDIADAITAAGVEVAKSEVRLPEGALRTTGEFEISVQLHSEVFATVNLQVVAAE

Entity 13 polymer

描述 description	50S ribosomal protein L13
分子量 formula_weight	15990.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	J

MKTFVAKPETVKRDWYVVDAEGKTLGRLASEIASRLRGKHKAEYTPHVDAGDYIIVINAEKVAVTGNKAKDKVYYRHSEFPGGLKSITFEKLIDRKPEMVLELAVKGMLPRGPLGRAMYRKLKVYAGAEHNHVAQQPQVLDI

Entity 14 polymer

描述 description	50S ribosomal protein L14
分子量 formula_weight	13594.1 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	K

MIQMQSMLDAADNSGARSVMCIKVLGGSHRRYAHIGDVIKVTVKEAIPRGKVKKGDVLKAVVVRTRKGVRRPDGSVIRFDRNACVLLNDNTEQPIGTRIFGPVTRELRGDKFMKIVSLAPEVL

Entity 15 polymer

描述 description	50S ribosomal protein L15
分子量 formula_weight	14878.4 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	L

MRLNTLAPAAGAKTSAKRVGRGIGSGLGKTGGRGHKGQKSRSGGSVRPGFEGGQMPLKQRLPKFGFTSRKSLVSAEVRLAELAKVSGDVVDLNSLKAANIITKNIEFVKVVLSGEINKAVTVKGLRVTKGAKAAIEAAGGKIEE

Entity 16 polymer

描述 description	50S ribosomal protein L16
分子量 formula_weight	15557.4 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	M

MLQPKRTKFRKVQTGRNRGLAKGTDVSFGEFGLKAVGRGRLTARQIEAARRAMTRHVKRQGKIWIRVFPDKPITEKPLEVRQGKGKGNVEYWVAQIQPGKVMYEMGGVPEELAREAFRLAARKLPFKTTFVTKQVM

Entity 17 polymer

描述 description	50S ribosomal protein L17
分子量 formula_weight	14231.5 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	N

MRHRKSGRQLNRNSSHRKAMFSNMASSLVRHEVIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEVVAKLFNELGPRFAARQGGYTRILKAGFRAGDKAPMAYIELVDRPAAEEAAE

Entity 18 polymer

描述 description	50S ribosomal protein L18
分子量 formula_weight	12641.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	O

MDKKASRIRRATRARRKIAELGATRLVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGNVDAAKAVGKAVAERALEKGVTAVAFDRSGFQYHGRVAALAESAREAGLKF

Entity 19 polymer

描述 description	50S ribosomal protein L19
分子量 formula_weight	13305.5 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	P

MSNIIKALEEEQMKSDLPKFAPGDTVVVQVKVKEGDRERLQAFEGVVIAIRNRGLHSAFTVRKISNGEGVERTFQTHSPIVDSIEVKRRGAVRRAKLYYLRERSGKSARIKEKLAKK

Entity 20 polymer

描述 description	50S ribosomal protein L20
分子量 formula_weight	13414.8 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	Q

MPRVKRGVQARARHKKVLKQAKGYYGARSRVYRVAFQAVTKAGQYAYRDRRAKKRQFRQLWIARINAASRQNGLSYSRFINGLKKASIEIDRKILADIAVFDKAAFAVLVEKAKAAL

Entity 21 polymer

描述 description	50S ribosomal protein L21
分子量 formula_weight	11544.3 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	R

MYAVFQSGGKQHRVSEGQTLRLEKLDVETGATVEFDKVLLVANGEDIKVGAPLVEGGKIVAEVVQHGRGDKVKIVKFRRRKHSRKQQGHRQWFTEVKITGINA

Entity 22 polymer

描述 description	50S ribosomal protein L22
分子量 formula_weight	12181.1 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	S

MEAIAKHNFARISPQKARLVADQIRGKSVDQALEILTFSNKKAAELVKKVLESAIANAEHNEGADIDDLNVAKIFVDEGPTMKRIMPRAKGRADRILKRSSHITVVVADR

Entity 23 polymer

描述 description	50S ribosomal protein L23
分子量 formula_weight	11151.1 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	T

MITEERILKVLRAPHISEKATMAAEKANTIVFKVAKDATKKEIKAAVEKLFEVEVKSVNTLITKGKTKRQGLRQGRRSDVKKAYVTLKEGQDLDFVGGAE

Entity 24 polymer

描述 description	50S ribosomal protein L24
分子量 formula_weight	11239.0 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	U

MAAKIRRNDEVIVLAGKDKGKKGKVTKVLATGKVIVEGINLVKKHQKPVPALGQQGGIVEQEAAIDASNVAIFNAATGKADRIGFRFEDGKKVRFFKSNGETVSN

Entity 25 polymer

描述 description	50S ribosomal protein L25
分子量 formula_weight	10391.0 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	V

MKFEAVVRTELGKGASRRLRHAGKFPAVVYGGEEAAVAIVLNHDDIVNQMDKPEFYEGIVLVIDGKEVSVKPQDVQRHAFKPKVEHMDFIRI

Entity 26 polymer

描述 description	50S ribosomal protein L27
分子量 formula_weight	9228.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	W

MAHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGNNVGIGKDHTLFALTEGKVKFEVKGPKNRKFVSIEAE

Entity 27 polymer

描述 description	50S ribosomal protein L28
分子量 formula_weight	9056.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	X

MSRVCQVTGKRPVTGNNRSHARNATKRRFLPNLQTHRFWVESEKRFVKLRLSAKGMRIIDKKGIDTVLADMRARGENV

Entity 28 polymer

描述 description	50S ribosomal protein L29
分子量 formula_weight	7205.3 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	Y

MKAQDLREKSVEELNAELMNLLREQFNLRMQAATGQLQQTHTLKAVRRDIARVKTVLTEKAGA

Entity 29 polymer

描述 description	50S ribosomal protein L30
分子量 formula_weight	6596.9 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	Z

MATIKVTQTKSSIGRLPKHKATLRGLGLRKINHTVELEDTPCVRGMINKVYYMVKVEE

Entity 30 polymer

描述 description	23S ribosomal RNA
分子量 formula_weight	881521.3 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polyribonucleotide
链编号 strand_id	A

GGUUAAGUGACUAAGCGUACACGGUGGAUGCCUUGGCAGUCAGAGGCGAUGAAGGACGUAUUAACUUGCGAUAAGCCCAGAUUAGGCAGUAAAAGCCACUUGAGUCUGGGAUUUCCGAAUGGGGAAACCCACUUACAUAAGUAAGUAUCCUGUUGUGAAUACAUAGCAACAGGAGGCGAACCGGGGGAACUGAAACAUCUAAGUACCCCGAGGAAAAGAAAUCAACCGAGAUUCCGAAAGUAGCGGCGAGCGAAAUUGGACUAGCCCUUAAGCUUUACACACGUUAGACGAACGGUCUGGAAAGGCCGACGAUACAGGGUGAUAGUCCCGUAGUUGACGAUGUGUGUUCAGUGAAAUCGAGUAGGGCGGGACACGUGAUAUCCUGUCUGAAUAUGGGGGGACCAUCCUCCAAGGCUAAAUACUACUGACUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGCGAAAAGAACCCCUGUGAGGGGAGUGAAAUAGAACCUGAAACCGUGUACGUACAAGCAGUAGGAGCAGGCUUGUCCUGUGACUGCGUACCUUUUGUAUAAUGGGUCAGCGACUUAUAUUCAGUGGCAAGGUUAACCAUCUAGGGGAGCCGUAGGGAAACCGAGUCUUAACUGGGCGUUCAGUCUCUGGAUAUAGACCCGAAACCAGGUGAUCUAGCCAUGGGCAGGUUGAAGGUUGAGUAACAUCAACUGGAGGACCGAACCGACUAAUGUUGAAAAAUUAGCGGAUGACUUGUGGCUAGGGGUGAAAGGCCAAUCAAACCUGGAGAUAGCUGGUUCUCCCCGAAAGCUAUUUAGGUAGCGCCUCGGACGAAUACUACUGGGGGUAGAGCACUGUUAAGGCUAGGCAACCCUUUGCAAACUCCGAAUACCAGUAAGUACUAUCCGGGAGACACACGGCGGGUGCUAACGUCCGUCGUGGAGAGGGAAACAACCCAGACCGCCAGCUAAGGUCCCAAAUUACUACUAAGUGGGAAACGAUGUGGGAAGGCUCAGACAGAGUCGGCCUGCGCGGAAGAUGUAACGGGGCUAAGUAGUAAACCGAAGCUGCGGCAAUACUAGUAUUGGGUAGGGGAGCGUUCUGUAAGCGGUUGAAGGUGUGUGGUAACGCAUGCUGGACGUAUCAGAAGUGCGAAUGCUGACAUGAGUAACGAUAAAGGGGGUGAAAAACCUCCUCGCCGGAAGACCAAGGGUUCCUGUCCAACGUUAAUCGGGGCAGGGUAAGUCGACCCCUAAGGCGAGGCCGAAAGGCGUAGUCGAUGGGAAACGGGUUAAUAUUCCCGUACUUCUUACAAUUGCGAUGGGGGGACGGAGAAGGCUAGGUGGGCCUGGCGACGGUUGUCCAGGUUCAAGUGCGUAGGCUUGAGAGUUAGGUAAAUCCGGCUCUCUCUAAGGCUGAGACACGACGUCGAGCACCUACGGGUGUGAAGUCAUUGAUGCCAUGCUUCCAGGAAAAGCCUCUAAGCUUCAGAUUGUAAGGAAUCGUACCCCAAACCGACACAGGUGGUCGGGUAGAGAAUACCAAGGCGCUUGAGAGAACUCGGGUGAAGGAACUAGGCAAAAUGGUACCGUAACUUCGGGAGAAGGUACGCUCUCGACGGUGAAGUCCCUCGCGGAUGGAGCUAUUGAGAGUCGCAGAUACCAGGUGGCUGCAACUGUUUAUUAAAAACACAGCACUGUGCAAAAUCGUAAGAUGACGUAUACGGUGUGACGCCUGCCCGGUGCCGGAAGGUUAAUUGAUGGGGUUAGACUUCGGUCGAAGCUCUUGAUCGAAGCCCCGGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGCGUAAUGAUGGCCACGCUGUCUCCACCCGAGACUCAGUGAAAUUGAAAUCGCUGUGAAGAUGCAGUGUACCCGCGGCUAGACGGAAAGACCCCGUGAACCUUUACUACAGCUUGGCACUGAACAUUGACCCUGUGUUGAUGUUCUAACGUUGACCCCUUAUCGGGGUUGCGGACAGUGCCUGGUGGGUAGUUUGACUGGGGCGGUCUCCUCCCAAAGCGUAACGGAGGAGCACGAAGGUGGGCUAAUCACGGUUCGUGAGGUUAGUGCAAUGGCAUAAGCCCGCUUGACUGCGAGAAUGACAAUUCGAGCAGGUGCGAAAGCAGGUCAUAGUGAUCCGGUGGUUCUGAAUGGAAGGGCCAUCGCUCAACGGAUAAAAGGUACUCCGGGGAUAACAGGCUGAUACCGCCCAAGAGUUCAUAUCGACGGCGGUGUUUGGCACCUCGAUGUCGGCUCAUCACAUCCUGGGGCUGAAGUCGGUCCCAAGGGUAUGGCUGUUCGCCAUUUAAAGUGGUACGCGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCCCUAUCUGCCGUGGGCGUUGGAGAAUUGAAAGGGGCUGCUCCUAGUACGAGAGGACCGGAGUGGACGAACCUCUGGUGUUCGGGUUGUGUCGCCAGACGCAUUGCCCGGUAGCUAAGUUCGGGAUCGAUAACCGCUGAAAGCAUCUAAGCGGGAAGCGAGCCUUGAGAUGAGUUCUCCCUGAUACUUUAAGUAUCCUAAAGGGUUGUCGUAGACUACGACGUUGAUAGGCAGGGUGUGUAAGCGUUGUGAGGCGUUGAGCUAACCUGUACUAAUUGCCCGUGAGGCUUAACC

Entity 31 non-polymer

描述 description	ZINC ION
分子量 formula_weight	65.4 kDa
来源方法 src_method	syn
拷贝数 entity_count	1

Entity 32 water

描述 description	water
分子量 formula_weight	18.0 kDa
来源方法 src_method	nat
拷贝数 entity_count	18

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7. 引用文献 (1)

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晶胞边长 a length_a	1.000 Å
晶胞边长 b length_b	1.000 Å
晶胞边长 c length_c	1.000 Å
晶胞夹角 α angle_alpha	90.00 °
晶胞夹角 β angle_beta	90.00 °
晶胞夹角 γ angle_gamma	90.00 °
晶胞分子数 Z z_pdb	—

空间群 space_group	P 1
空间群编号 int_tables_number	1
晶系 crystal_system	—

分辨率 resolution	2.700 Å
最低分辨率 resolution_low	224.930 Å
R 因子 r_factor	0.2042
R_work r_work	0.2042
R_free r_free	—

分辨率 resolution	2.70 Å
分辨率测定方法 resolution_method	—
颗粒数 num_particles	294068

fit	/app/data/saxs_computation/h9/9h91/9h91.fit
pddf	/app/data/pr_computation/h9/9h91/9h91.pr.out
profile	/app/data/saxs_computation/h9/9h91/9h91.dat

Cryo-EM structure of the Vibrio natrigens 50S ribosomal subunit in complex with the proline-rich antimicrobial peptide Bac5(1-17).

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

1. 结构基本信息 1. Structure Basics

2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

4. 晶体学与实验 4. Crystallography & Experiment

晶胞参数 Unit Cell

对称性 Symmetry

精修参数 Refinement

冷冻电镜 EM 3D

5. 实体与聚合体信息 (32)

Entity 1 polymer

聚合体 Polymer

Entity 2 polymer

聚合体 Polymer

Entity 3 polymer

聚合体 Polymer

Entity 4 polymer

聚合体 Polymer

Entity 5 polymer

聚合体 Polymer

Entity 6 polymer

聚合体 Polymer

Entity 7 polymer

聚合体 Polymer

Entity 8 polymer

聚合体 Polymer

Entity 9 polymer

聚合体 Polymer

Entity 10 polymer

聚合体 Polymer

Entity 11 polymer

聚合体 Polymer

Entity 12 polymer

聚合体 Polymer

Entity 13 polymer

聚合体 Polymer

Entity 14 polymer

聚合体 Polymer

Entity 15 polymer

聚合体 Polymer

Entity 16 polymer

聚合体 Polymer

Entity 17 polymer

聚合体 Polymer

Entity 18 polymer

聚合体 Polymer

Entity 19 polymer

聚合体 Polymer

Entity 20 polymer

聚合体 Polymer

Entity 21 polymer

聚合体 Polymer

Entity 22 polymer

聚合体 Polymer

Entity 23 polymer

聚合体 Polymer

Entity 24 polymer

聚合体 Polymer

Entity 25 polymer

聚合体 Polymer

Entity 26 polymer

聚合体 Polymer

Entity 27 polymer

聚合体 Polymer

Entity 28 polymer

聚合体 Polymer

Entity 29 polymer

聚合体 Polymer

Entity 30 polymer

聚合体 Polymer

Entity 31 non-polymer

Entity 32 water

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8. 文件与曲线 (10)

Files (7)

Curves (3)