9i5t

50S subunit of P. gingivalis ribosome with Lefamulin

Method: ELECTRON MICROSCOPY D_max: 225.7 Å Quality: GOOD

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

下载 Download SAXS (.dat) P(r) (.pr.out) CIF

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1. 结构基本信息 1. Structure Basics

条目编号 entry_id	9i5t
沉积日期 deposition_date	2025-01-28
结构标题 title	50S subunit of P. gingivalis ribosome with Lefamulin
关键词 keywords	Ribosome, antibiotics, macrolide-resistance; RIBOSOME
实验方法 method	ELECTRON MICROSCOPY

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2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier	67.35 Å
回转半径 Rg (电子) rg_electron	68.40 Å
零角强度 I(0) i0	47828200000.00
分子量 molecular_weight	1205100.0 kDa
排除体积 excluded_volume	1235900 Å³
包络体积 envelope_volume	2089000 Å³
水化壳体积 shell_volume	233770 Å³
包络直径 envelope_diameter	224.3 Å
壳层 Rg shell_rg	80.47 Å
包络 Rg envelope_rg	68.19 Å
形状 Rg shape_rg	68.51 Å
总 Rg total_rg	68.28 Å
总原子数 total_atoms	80961
残基数 n_residues	5917
球谐函数阶数 n_harmonics	20
q 范围 q_range	— – 0.5000 Å⁻¹
数据点数 n_points	101
壳层类型 shell_type	directional
溶剂电子密度 solvent_density	0.3340 e/Å³
壳层衬度 contrast_shell	0.0300 e/Å³
CRYSOL 版本 crysol_version	4.1.3

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3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax	225.7 Å
Rg (实空间) rg_real	67.17 Å
Rg 误差 (实空间) rg_real_error	1.91 Å
I(0) (实空间) i0_real	4.7830e+10
I(0) 误差 (实空间) i0_real_error	1.1130e+09
Rg (倒空间) rg_reciprocal	67.91 Å
I(0) (倒空间) i0_reciprocal	47890000000.0000
解质量估计 total_estimate	0.8561
解质量评级 solution_quality	GOOD a GOOD solution
P(r) 峰数 n_peaks	1
主峰位置 r_peak_primary	88.3 Å
偏度 Skewness skewness	0.231
峰度 Kurtosis kurtosis	-0.359
角度范围 angular_range	— – 0.1150 Å⁻¹
当前正则化参数 α current_alpha	0.0000
最高正则化参数 α highest_alpha	7481000000.0000
实空间数据点数 n_real_points	24
GNOM 版本 gnom_version	4.1.3
质量判据 quality_criteria	AN1: 0.000; Oscil: 0.801; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.965; Smooth: 0.756

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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合体信息 (38)

Entity 1 polymer

描述 description	Large ribosomal subunit protein bL28
分子量 formula_weight	9027.8 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	0
原子数 atom_count	82341

MSKICQITGKKAMVGNNVSHSKRRTKRVFDVNLFRKKFYWVEQDCWVVLRISAAGLRLINKIGLDAAIKRAAEKGFLNA

Entity 2 polymer

描述 description	Large ribosomal subunit protein uL29
分子量 formula_weight	7499.8 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	1

MKIAEIKELATKELQERLDAEVAAYDQMRINHAVSPLDSPAKLKHQRRMIAQMKTVLRQRELNK

Entity 3 polymer

描述 description	Large ribosomal subunit protein uL5
分子量 formula_weight	20912.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	11

MSATANLKKDYQERIVPALMKQFGYTSVMQVPVLKKIVINQGLGMATGDKKIIDVAVSELTAITGQKAVPTVSKKDISNFKLRKKMPIGVMVTLRREQMYEFLERLVRIALPRIRDFKGIESKLDGRGNYTLGINEQIIFPEINIDAITKILGMNITFVTSAQSDEEGYALLKEFGLPFKNAKKQN

Entity 4 polymer

描述 description	Large ribosomal subunit protein bL31B
分子量 formula_weight	9816.3 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	12

MKKGIHPENYRPVVFKDMSNEDIFITRSTMEAKETIEIDGVTYPLIKVEISNTSHPFFTGKAKLVDTAGRVDKFMSRYGDRNKKK

Entity 5 polymer

描述 description	Large ribosomal subunit protein uL30
分子量 formula_weight	6700.1 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	2

MAKIKIQQVRSRIRCPKDQKRTLDALGLRKLNQIVEHEATPSILGMVNKVRHLVLIVE

Entity 6 polymer

描述 description	Large ribosomal subunit protein bL32
分子量 formula_weight	6958.2 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	4

MAHPKRRQSKTRTAKRRTHDKAVMPTLAKCPNCGAWHIYHTVCGDCGYYRGKLAIEKEVAV

Entity 7 polymer

描述 description	Large ribosomal subunit protein bL34
分子量 formula_weight	5761.7 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	6

MKRTYQPSNRKRLNKHGFRSRMATANGRRVLAARRAKGRAKLTVSDEFVG

Entity 8 polymer

描述 description	Large ribosomal subunit protein bL35
分子量 formula_weight	7518.1 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	7

MPKLKTNSGAKKRFALTGTGKIKRKHAFKSHILTKKTKKQKRNLTYFSTVHKVDENAVKQLLCLR

Entity 9 polymer

描述 description	Large ribosomal subunit protein bL36
分子量 formula_weight	4601.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	8

MKVRASVKKRTPECKIVRRKGRLYVINKKNPKYKQRQG

Entity 10 polymer

描述 description	23S rRNA
分子量 formula_weight	934217.7 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polyribonucleotide
链编号 strand_id	A

UAAGGGCAGACGGUGGAUGCCUAGGCUCUCGGAGGCGAAGAAGGACGUGAUAAGCUGCGAAAAGCUGCGGGAAUCGGCACAUACGAAUUGAUCCGCAGAUAUCCGAAUGGGGCAACCCGUCAGGCCAAGGCCUGACACAUGAAUUGAUUUCAUGAGCGAACGCGGGGAACUGAAACAUCUCAUUACCCGUAGGAGAAGAAAACAAAAGUGAUUCCCUCAGUAGUGGCGAGCGAACGGGGAUUAGCCCAAACCGGCUUUGUUUCGGCAAAGUCGGGGUAAUAGGACUUCGACAAAAGUUUAAUGAUAGAUAUAGGAGAACCUACUGGAAAGUAUGGCCGAAGAGCAUGAAAGCUGCGUAUCCGACAUAUCGAACAAUAGACGACGGAGCACCUGAGUAGCGCGGGACACGAGACAUCCUGUGUGAAUUGGCGGGGCCCAUCCCGUAAGGCUAAAUACUCCCGAGAGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGUGAAAAGAACCUCGAACAGAGGAGUGCAAUAGACCCUGAACCCGUCUGCCUACAAGCGGUAGGAGCGCCAUUAAGGUGUGACUGCGUGCCUUUUGCAUAAUGAACCUACGAGUUACUGUUUGUGGCAAGGUUAAUUGUUAUAAUCAAGACAAGGAGCCGAAGCGAAAGCGAGUCUUAAAAGGGCGCCCAUUUAGUCACGAGCAGUAGACGCGAAACCAAGUGAUCUACCCUUGGUCAGGUUGAAGGUUAGGUAACACUAACUGGAGGACCGAAUCGGUAAGCGUUGAAAAGCUUUCGAAUGAACUGAGGGUAGGGGUGAAAGGCUAAUCAAACUUGGAGAUAGCUCGUACUCCCCGAAAUGCAUUUAGGUGCAGCCUGUUGGAUGUUAUCAUGAGGUAGAGCGACUGAUUGGAUGCGAGGGUUUCACCGCCUAUCAAGUCCAGAUAAACUCCGAAUGCAUGAUAAUUGACCGAUGGAGUGAGGGCAUGGGUGCUAAGGUCCAUGUCCGAGAGGAGAAGAAUCCGGACCACCGGCUAAGGUCCCGAAAUAAUUGCUAAGUUGUAAAAACGAAGUCAAGAAGCAGAGACAGCUAGGAUGUUGGCUUGGAAGCAGCCAUUCAUUUAAAGAGUGCGUAACAGCUCACUAGUCGAGGAUUUUGGCAUGGAUAAUACACGGGCAUAAGCAAUUUACCGAAGCCGUGGGAUAUAGUUAAUAUAUCGGUAGGGGAGCAUUCCAGCGACGUAGAAGGGAAAAGGGCGACUUUUUCUGGAGUUUCUGGAAAAGCAAAUGUAGGUAUAAGUAACGAUAAAGGGGGCGAGAACCCCCCUCGCCGAAAGACCAAGGUUUCCUGAUCAACGCUAAUCGGAUCAGGGUUAGUCGGGGCCUAAGGAUAAGCCGAAUGGCGAUUCCGAUGGAAGAACCGGUUAAUAUUCCGGUACUGAUACUAGAGGCGAUGUGGUGACGGAGAAGUGACAGUCCGGCCGUCUGACGGAUUAGGCGGUUAAAGGGUGUAGAUGUUAUUCGGGGUAGGCAAAUCCGCCCUCAGAGUGCAACCUGACAGUACCGGAGUACAAGUACGAAGGGAUAAAGGACGUAACCCGGCUCCCAAGAAAACCCGCUAAGAUAUUUCUUGUGUUACCCGUACCGUAAACCGACACAGGUGGUUGGGUUGAGUAUACUAAGGCGCUCGAGAGAUUCGCGGUUAAGGAACUAGGCAAAAUGGUCCUGUAACUUCGGGAGAAAGGACGCCUGUCCCGGGACAGGCCGCAGAAACCAGGCCCAGGCGACUGUUUAACAAAAACACAAGGCUAUGCAAAAAAGCAAUUUGAGGUAUAUAGUCUGACACCUGCCCGGUGCUGGAAGGUUAAGAGGAGGAGUCAUGUCAAGGAGAAGCUCUGAAUUGAAGCCCCAGUAAACGGCGCCGUAACUAUAACGGUCCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGUGUAACGAUCUGGGCACUGUCUCAACCGCGAUCUCGGUGAAAUUGUAGUAUCGGUGAAGAUGCCGAUUACCCGCAACGGGACGAAAAGACCCCGUGAACCUUUACUAUAGCUUUACAUUGUAUUGGGCAUCAGAUGUGUAGGAUAGGCCGGAGGCAGAGAAGCGGGUACGCCAGUAUUCGUGGAGUCGAUGUUGAAAUACGGCCCUUUUGAUGUUUGGGAUACUAACUCGCGGGUGGCGAGGACAGUGUAUGGUGGGUAGUUUGACUGGGGUGGUCGCCUCCAAAAGCGUAACGGAGGCUUCUAAAGGUACCCUCAGGCCGAUUGUAAACCGGUCGCAGAGUGUAAUGGCACAAGGGUGCUUGACUGGGAGACAAACAAGUCGCACAGGUAGGAAACUAGAGCAUAGUGAUCCGGUGGUCCCGCAUGGAAGGGCCAUCGCUCAAAGGAUAAAAGGUACUCCGGGGAUAACAGGCUGAUCACUCCCAAGAGUCCAUAUCGACGGAGUGGUUUGGCACCUXGAUGUCGGCUCGUCACAUCCUGGGGCUGGAGAAGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGUGGCACGCGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGUCUCUAUCUGUUGUGGGCGCAGGAAAUUUGCGAGGGUCUGACACUAGUACGAGAGGACCGUGUUGGACAGACCCCUGGUUUACCGGUUGUACCGCCAGGUGCACCGCCGGGUAUCCACGUCUGGUAAGGAUAAGUGCUGAAAGCAUCUAAGCACGAAGCCGGCCUCAAGAUAAGAUUUCCAUAAAUAGGGUGGUUAAAGACUAUGACCUUGAUAGGCUGCAGGUGUAUGAUUGGUAACAAUUAAGCCGAGCAGUACUAAUAGCCCGAACUUU

Entity 11 polymer

描述 description	5S rRNA
分子量 formula_weight	35186.9 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polyribonucleotide
链编号 strand_id	B

UCAGGUGGUUAUAACGUUGGGGAUCCACCUCUUCCCAUUCCGAACAGAGAAGUUAAGCCCAACGGUGCCGAUGGUACUGCGUCACAGUGGGAGAGUAGGACGCCGCCGA

Entity 12 polymer

描述 description	Large ribosomal subunit protein uL2
分子量 formula_weight	29778.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	D

MGIRKLKPTTPGQRHKVIGAFDKITASTPEKSLVVGKKKTGGRNNTGKMTMRYIGGGHKQKYRFIDFKRTKDGIPATVKTIEYDPNRSSRIALLYYADGAKAYIIAPDGLEVGHTVMSGSEAAPEVGNALPLANIPVGTIIHNIELRPGQGAKMVRSAGSFAQLTSREGTYVVIKMPSGEVRRILSTCKATIGSVGNSDHALEKSGKAGRSRWLGRRPHNRGVVMNPVDHPMGGGEGRQSGGHPRSRKGLYAKGLKTRAPKKHSSKYIIERRKK

Entity 13 polymer

描述 description	Large ribosomal subunit protein uL3
分子量 formula_weight	21925.5 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	E

MPGLLGKKIGMTSVFSAEGKNLPCTVIEVGPCVVTQVKTLEKDGYSALQLGFVDAKEKHTTKPLAGHFKKANVAPKRHLAEFKNFEGEHKLGDVLNVEFFSDADFVDVVGTSKGKGFQGVVKRHGFGGVGQATHGQHNRLRAPGAVGACSYPAKVFKGTRMAGQMGNERVTVQNLEVIKVMPEHNLLLVKGSVPGAKGSILLIEK

Entity 14 polymer

描述 description	Large ribosomal subunit protein uL4
分子量 formula_weight	23247.9 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	F

MELSVYNIKGEDTGKKVVLDDSIFAIEPNDHAIYLDVKQYMANQRQGTHKAKERSELSGSTRKLIRQKGSGGARRGDINSPLLSGGARVFGPRPRNYSFKLNKKLKALARRSALSYKAKNNEIIVVEDFNFDAPKTKAFKAISAALKVGEKKVLYVLPEVNKNVYLSARNLPNTNLILANLINTYTVLASKNLVLTERSVAVVNELFKA

Entity 15 polymer

描述 description	Large ribosomal subunit protein uL13
分子量 formula_weight	17075.8 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	M

MDTLSFKTISANKATVTKEWVIVDAEGQTLGRMCAKVAKLLRGKYKPNFTPHVDCGDNVIVINADKIVLSGNKWDGRIYLRHTGYPGGQRQFTPRDFMNKGPEYLFRKVVKGMLPKNRLGAKIIGNLYVYAGTEHKHEAQQPRQLDINSLK

Entity 16 polymer

描述 description	Large ribosomal subunit protein uL15
分子量 formula_weight	15616.1 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	O

MNLSSLKPAEGAVKSRKRIGRGPGSGLGGTSTRGHKGAKSRSGYSKKIGFEGGQMPIQRRLPKFGFKNINRVEYKPINLSVLQTLSEANSLTKISVEDLIAAGLVSRNSLVKILANGTVTTALTVEAHAFSKTAEEAIVRAGGSVVKL

Entity 17 polymer

描述 description	Large ribosomal subunit protein uL16
分子量 formula_weight	16344.1 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	P

MLQPKKTKFRRQQKGRMKGFAQRGNQLSFGSFGIKSLQSKWITGRQIEAARIAVTRYMQRQGQVWVRIFPDKPITKKGEGVRMGKGKGAPEGFVAPITPGRIIFEVEGVPYEIAKEALRLAAQKLPVTTKFVVRHDYDIQNQNA

Entity 18 polymer

描述 description	Large ribosomal subunit protein bL17
分子量 formula_weight	18074.1 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	Q

MRHNKKFNHLGRKAAHRKAMLSNMAASLILHKRIFTTVAKAKALRIYVEPLLTKTKEDTTHSRRIAFSYLQNKYALKELFGDVAAKIADRPGGYTRILKTGYRLGDNAAMCFIELVDYNENMLGEAAKKATKTRRSRKRKSADVVVEAAPAEETPKAAEE

Entity 19 polymer

描述 description	Large ribosomal subunit protein uL18
分子量 formula_weight	12560.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	R

MVTKEQRRQKIKARVRGKISGTQEKPRLTVFRSNKQIYAQLIDDIAGRTLASASSLKLEMTGSKKEIAAKVGDEIAKAATEAGISTVVFDRNGYLFHGRIKELADAARKGGLKF

Entity 20 polymer

描述 description	Large ribosomal subunit protein bL19
分子量 formula_weight	14120.5 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	S

MDFIKIVNEEFKSGKEHPKFNSGDTITVEYRIKEGNKERIQKYRGVVIRISGHGDKKRFTVRKISDGIGVERIFPIESPFIENITVEKYGKVRRAKLYYLRGLTGKKARIKERRVALSSKD

Entity 21 polymer

描述 description	Large ribosomal subunit protein bL20
分子量 formula_weight	13324.7 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	T

MPRSVNHVASRAKRKRILKLTRGYFGARKNVWTVAKNTWEKGLTYAYRDRKSKKRNFRALWIQRINAAARLEGMSYSRLMGALHANGIEINRKVLADLAMNHPEAFRAIVAKVKN

Entity 22 polymer

描述 description	Large ribosomal subunit protein bL21
分子量 formula_weight	11843.9 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	U

MYVIVDIQGQQMKVEQGRRLFVHHIKDVESGASVEFDKVLLVDNNGAITVGSPLVEGAKVVCEVLTPLVKGDKVLIFHKKRRKGYRKLNGHRQQFTEILVKEVVA

Entity 23 polymer

描述 description	Large ribosomal subunit protein uL22
分子量 formula_weight	15357.8 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	V

MGARKHNSAEARKEALKQMYFAKLRNVPTSPRKMRLVADMIRGMEVNRALGVLKFSNKEASARVEKLLRSAVANWEEKNERKAEEGELFVSRICVDGASTLKRLRPAPQGRGYRIRKRSNHVTIYVDTLNNDNN

Entity 24 polymer

描述 description	Large ribosomal subunit protein uL23
分子量 formula_weight	11116.1 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	W

MGIIIKPIISEKMTAVTEKMSERYGFRVSPNANKIEIKKAVEAMYNVKVEDVNTMRYDGKRKNRYTKSGLIRGKEASFKKAIVTLKKGETIDFFSNI

Entity 25 polymer

描述 description	Large ribosomal subunit protein uL24
分子量 formula_weight	11627.7 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	X

MSKLHIKKGDTVMVISGEDKGHSGRVLEVLVKEQRAIVEGLNMIKKHAKPSAKNPQGGIISKEAPIHISNLNVVDPKTGKATRIGRRLNENGKLVRYAKKSGEEIK

Entity 26 polymer

描述 description	Large ribosomal subunit protein bL25
分子量 formula_weight	21028.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	Y

MKTFQLTGTPRAEFGKKAAKAIRKEDQIPAVLYGGKGEGVNFIVSQDAVRNLIYSPEIFLVELTVEGSGSYKAILKEIQFHPVTDRIIHIDFLQVTDEKPVVMEVPVVLTGHAEGVKAGGKLSLEMRKLKVKALYSEIPEKLDIDVSDLQLGKTIQVGELHFEGLTLMNAKNAVVCAVKLTRAARGAAVKKQ

Entity 27 polymer

描述 description	Large ribosomal subunit protein bL27
分子量 formula_weight	9244.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	Z

MAHKKGVGSSKNGRESESKRLGVKVYGGEMAKAGNILVRQRGTVHHPGENVGIGKDHTLYALKSGVVVFTRKKNDRSYVSIKTES

Entity 28 polymer

描述 description	Large ribosomal subunit protein bL9
分子量 formula_weight	19356.2 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	h

MQVILKEDVVNLGYKDDIVTVKDGYGRNFLIPQGKAVIASESAKKVLAENLRQRAHKIAQIKKEAEEKAASMQGISLTIKAKTSSTGTIFGSVTNIQIAEELAKKGVEVDRKIIVLKPAVKEVGNYTAVVRLHKEVTVEIPFEVVSENETIIEAKPEGAPVPVAEEPAAEAEQAEVAAE

Entity 29 polymer

描述 description	DUF4295 domain-containing protein
分子量 formula_weight	5559.5 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	15

MAKKSVATFKKGDGRTYSKVIKMVKSPKTGAYTFQEEMVPNEAVKDFFK

Entity 30 polymer

描述 description	Large ribosomal subunit protein uL6
分子量 formula_weight	20389.8 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	13

MSRIGKLPISIPAGVTVSHKDEIVTVKGPKGELSQYVDPRITVVIEGGMIHLERKTDDRIERSLHGLYRSLINNMVQGVSAGFKRELELVGVGYRASNQGQLLELSLGFTHSIFMQLPKEVTVETKSERNKNPLIILESADKQLLGQVCMKIRSFRKPEPYKGKGVKFVGEQIRRKSGKSAGK

Entity 31 polymer

描述 description	Large ribosomal subunit protein uL14
分子量 formula_weight	13086.3 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	N

MIQQESRLVVADNSGAKEALCIRVLGGTRRRYASVGDIIVVSVKSVIPSSDIKKGAVSKAVIVRTKKEVRRPDGSYIRFDDNACVLLNAAGDIRGSRIFGPVARELRGTNMKIVSLAPEVL

Entity 32 polymer

描述 description	Large ribosomal subunit protein bL33
分子量 formula_weight	7356.8 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	5

MAKKVKGNRVQVILECTEHKESGMPGISRYITTKNRKNTTQRLELKKYNPILRRMTLHKEIK

Entity 33 non-polymer

描述 description	MAGNESIUM ION
分子量 formula_weight	24.3 kDa
来源方法 src_method	syn
拷贝数 entity_count	139

Entity 34 non-polymer

描述 description	ZINC ION
分子量 formula_weight	65.4 kDa
来源方法 src_method	syn
拷贝数 entity_count	1

Entity 35 non-polymer

描述 description	Lefamulin
分子量 formula_weight	507.7 kDa
来源方法 src_method	syn
拷贝数 entity_count	1

Entity 36 non-polymer

描述 description	POTASSIUM ION
分子量 formula_weight	39.1 kDa
来源方法 src_method	syn
拷贝数 entity_count	18

Entity 37 non-polymer

描述 description	SODIUM ION
分子量 formula_weight	23.0 kDa
来源方法 src_method	syn
拷贝数 entity_count	15

Entity 38 water

描述 description	water
分子量 formula_weight	18.0 kDa
来源方法 src_method	nat
拷贝数 entity_count	1380

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7. 引用文献 (1)

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晶胞边长 a length_a	1.000 Å
晶胞边长 b length_b	1.000 Å
晶胞边长 c length_c	1.000 Å
晶胞夹角 α angle_alpha	90.00 °
晶胞夹角 β angle_beta	90.00 °
晶胞夹角 γ angle_gamma	90.00 °
晶胞分子数 Z z_pdb	—

空间群 space_group	P 1
空间群编号 int_tables_number	1
晶系 crystal_system	triclinic

分辨率 resolution	2.60 Å
分辨率测定方法 resolution_method	—
颗粒数 num_particles	223396

fit	/app/data/saxs_computation/i5/9i5t/9i5t.fit
pddf	/app/data/pr_computation/i5/9i5t/9i5t.pr.out
profile	/app/data/saxs_computation/i5/9i5t/9i5t.dat

50S subunit of P. gingivalis ribosome with Lefamulin

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

1. 结构基本信息 1. Structure Basics

2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

4. 晶体学与实验 4. Crystallography & Experiment

晶胞参数 Unit Cell

对称性 Symmetry

冷冻电镜 EM 3D

5. 实体与聚合体信息 (38)

Entity 1 polymer

聚合体 Polymer

Entity 2 polymer

聚合体 Polymer

Entity 3 polymer

聚合体 Polymer

Entity 4 polymer

聚合体 Polymer

Entity 5 polymer

聚合体 Polymer

Entity 6 polymer

聚合体 Polymer

Entity 7 polymer

聚合体 Polymer

Entity 8 polymer

聚合体 Polymer

Entity 9 polymer

聚合体 Polymer

Entity 10 polymer

聚合体 Polymer

Entity 11 polymer

聚合体 Polymer

Entity 12 polymer

聚合体 Polymer

Entity 13 polymer

聚合体 Polymer

Entity 14 polymer

聚合体 Polymer

Entity 15 polymer

聚合体 Polymer

Entity 16 polymer

聚合体 Polymer

Entity 17 polymer

聚合体 Polymer

Entity 18 polymer

聚合体 Polymer

Entity 19 polymer

聚合体 Polymer

Entity 20 polymer

聚合体 Polymer

Entity 21 polymer

聚合体 Polymer

Entity 22 polymer

聚合体 Polymer

Entity 23 polymer

聚合体 Polymer

Entity 24 polymer

聚合体 Polymer

Entity 25 polymer

聚合体 Polymer

Entity 26 polymer

聚合体 Polymer

Entity 27 polymer

聚合体 Polymer

Entity 28 polymer

聚合体 Polymer

Entity 29 polymer

聚合体 Polymer

Entity 30 polymer

聚合体 Polymer

Entity 31 polymer

聚合体 Polymer

Entity 32 polymer

聚合体 Polymer

Entity 33 non-polymer

Entity 34 non-polymer

Entity 35 non-polymer

Entity 36 non-polymer

Entity 37 non-polymer