SAXS 散射曲线 SAXS Profile
P(r) 距离分布 P(r) Distribution
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| 条目编号 entry_id | 9i8b |
| 沉积日期 deposition_date | 2025-02-04 |
| 结构标题 title | NMR-based model of an A-form 20mer dsRNA |
| 关键词 keywords | A-form, Duplex, RNA; RNA |
| 实验方法 method | SOLUTION NMR |
| 回转半径 Rg (Guinier) rg_guinier | 19.08 Å |
| 回转半径 Rg (电子) rg_electron | 19.51 Å |
| 零角强度 I(0) i0 | 697523000.00 |
| 分子量 molecular_weight | 127700.0 kDa |
| 排除体积 excluded_volume | 119900 ų |
| 包络体积 envelope_volume | 21730 ų |
| 水化壳体积 shell_volume | 10817 ų |
| 包络直径 envelope_diameter | 71.9 Å |
| 壳层 Rg shell_rg | 23.35 Å |
| 包络 Rg envelope_rg | 19.71 Å |
| 形状 Rg shape_rg | 19.46 Å |
| 总 Rg total_rg | 19.65 Å |
| 总原子数 total_atoms | 12780 |
| 残基数 n_residues | 400 |
| 球谐函数阶数 n_harmonics | 20 |
| q 范围 q_range | — – 0.5000 Å−1 |
| 数据点数 n_points | 101 |
| 壳层类型 shell_type | directional |
| 溶剂电子密度 solvent_density | 0.3340 e/ų |
| 壳层衬度 contrast_shell | 0.0300 e/ų |
| CRYSOL 版本 crysol_version | 4.1.3 |
| 最大尺寸 Dmax dmax | 65.8 Å |
| Rg (实空间) rg_real | 19.42 Å |
| Rg 误差 (实空间) rg_real_error | 0.58 Å |
| I(0) (实空间) i0_real | 6.9750e+08 |
| I(0) 误差 (实空间) i0_real_error | 9.7070e+06 |
| Rg (倒空间) rg_reciprocal | 19.37 Å |
| I(0) (倒空间) i0_reciprocal | 697500000.0000 |
| 解质量估计 total_estimate | 0.6047 |
| 解质量评级 solution_quality |
REASONABLE
a REASONABLE solution
|
| P(r) 峰数 n_peaks | 2 |
| 主峰位置 r_peak_primary | 16.4 Å |
| 偏度 Skewness skewness | 0.610 |
| 峰度 Kurtosis kurtosis | -0.294 |
| 角度范围 angular_range | — – 0.4150 Å−1 |
| 当前正则化参数 α current_alpha | 0.0000 |
| 最高正则化参数 α highest_alpha | 218100.0000 |
| 实空间数据点数 n_real_points | 73 |
| GNOM 版本 gnom_version | 4.1.3 |
| 质量判据 quality_criteria |
AN1: 0.000;
Oscil: 0.531;
Stabil: 1.000;
Sysdev: 0.295;
Positv: 1.000;
Valcen: 0.399;
Smooth: 0.980
|
Entity 1
polymer
| 描述 description | ;RNA (5'-R(*AP*CP*UP*GP*GP*AP*CP*AP*AP*AP*UP*AP*CP*UP*CP*CP*GP*AP*GP*G)-3')
; |
| 分子量 formula_weight | 6429.9 kDa |
| 来源方法 src_method | syn |
| 拷贝数 entity_count | 1 |
聚合体 Polymer
| 聚合体类型 type | polyribonucleotide |
| 链编号 strand_id | A |
| 原子数 atom_count | 12780 |
ACUGGACAAAUACUCCGAGG
Entity 2
polymer
| 描述 description | ;RNA (5'-R(*CP*CP*UP*CP*GP*GP*AP*GP*UP*AP*UP*UP*UP*GP*UP*CP*CP*AP*GP*U)-3')
; |
| 分子量 formula_weight | 6337.8 kDa |
| 来源方法 src_method | syn |
| 拷贝数 entity_count | 1 |
聚合体 Polymer
| 聚合体类型 type | polyribonucleotide |
| 链编号 strand_id | B |
CCUCGGAGUAUUUGUCCAGU
Unique conformational dynamics and protein recognition of A-to-I hyper-edited dsRNA.
Nucleic Acids Res. (2025)
Files (7)
- pr_distribution /app/data/pr_computation/i8/9i8b/pr_distribution.json
- pr_output /app/data/pr_computation/i8/9i8b/9i8b.pr.out
- pr_plot /app/data/visualization/pr_computation/i8/9i8b/9i8b_pr_distribution.png
- saxs_curve_dat /app/data/saxs_computation/i8/9i8b/9i8b.dat
- saxs_fit /app/data/saxs_computation/i8/9i8b/9i8b.fit
- saxs_log /app/data/saxs_computation/i8/9i8b/9i8b.log
- saxs_plot /app/data/visualization/saxs_computation/i8/9i8b/9i8b_saxs_profile.png
Curves (3)
| fit |
/app/data/saxs_computation/i8/9i8b/9i8b.fit |
| pddf |
/app/data/pr_computation/i8/9i8b/9i8b.pr.out |
| profile |
/app/data/saxs_computation/i8/9i8b/9i8b.dat |