High-resolution crystal structure of an isoform of Chitin Binding Protein from Iberis umbellata L.

条目编号 entry_id	9lh0
沉积日期 deposition_date	2025-01-11
最后修订 last_revision	2025-03-19
结构标题 title	High-resolution crystal structure of an isoform of Chitin Binding Protein from Iberis umbellata L.
关键词 keywords	Isoform, Chitin Binding Protein, Iberis, Candytuft, PLANT PROTEIN; PLANT PROTEIN
实验方法 method	X-RAY DIFFRACTION

回转半径 Rg (Guinier) rg_guinier	15.21 Å
回转半径 Rg (电子) rg_electron	14.32 Å
零角强度 I(0) i0	3653510.00
分子量 molecular_weight	12437.0 kDa
排除体积 excluded_volume	15135 ų
包络体积 envelope_volume	17559 ų
水化壳体积 shell_volume	11004 ų
包络直径 envelope_diameter	57.9 Å
壳层 Rg shell_rg	19.55 Å
包络 Rg envelope_rg	15.10 Å
形状 Rg shape_rg	14.34 Å
总 Rg total_rg	15.29 Å
总原子数 total_atoms	864
残基数 n_residues	109
球谐函数阶数 n_harmonics	20
q 范围 q_range	— – 0.5000 Å−1
数据点数 n_points	101
壳层类型 shell_type	directional
溶剂电子密度 solvent_density	0.3340 e/ų
壳层衬度 contrast_shell	0.0300 e/ų
CRYSOL 版本 crysol_version	4.1.3

最大尺寸 Dmax dmax	56.0 Å
Rg (实空间) rg_real	15.24 Å
Rg 误差 (实空间) rg_real_error	0.48 Å
I(0) (实空间) i0_real	3.6540e+06
I(0) 误差 (实空间) i0_real_error	5.1900e+04
Rg (倒空间) rg_reciprocal	15.24 Å
I(0) (倒空间) i0_reciprocal	3654000.0000
解质量估计 total_estimate	0.7420
解质量评级 solution_quality	REASONABLE a REASONABLE solution
P(r) 峰数 n_peaks	3
主峰位置 r_peak_primary	18.4 Å
偏度 Skewness skewness	0.481
峰度 Kurtosis kurtosis	0.183
角度范围 angular_range	— – 0.5000 Å−1
当前正则化参数 α current_alpha	0.0000
最高正则化参数 α highest_alpha	633300.0000
实空间数据点数 n_real_points	80
GNOM 版本 gnom_version	4.1.3
质量判据 quality_criteria	AN1: 0.000; Oscil: 0.591; Stabil: 0.999; Sysdev: 1.000; Positv: 1.000; Valcen: 0.869; Smooth: 0.000

晶胞参数 Unit Cell

晶胞边长 a length_a	45.352 Å
晶胞边长 b length_b	72.981 Å
晶胞边长 c length_c	31.373 Å
晶胞夹角 α angle_alpha	90.00 °
晶胞夹角 β angle_beta	90.00 °
晶胞夹角 γ angle_gamma	90.00 °
晶胞分子数 Z z_pdb	4

对称性 Symmetry

空间群 space_group	P 21 21 2
空间群编号 int_tables_number	18
晶系 crystal_system	—

精修参数 Refinement

分辨率 resolution	0.910 Å
最低分辨率 resolution_low	28.820 Å
R 因子 r_factor	0.1768
R_work r_work	0.1763
R_free r_free	0.1861

衍射实验 Diffraction

实验温度 temperature

100.0 K

Files (7)

• pr_distribution /app/data/pr_computation/lh/9lh0/pr_distribution.json
• pr_output /app/data/pr_computation/lh/9lh0/9lh0.pr.out
• pr_plot /app/data/visualization/pr_computation/lh/9lh0/9lh0_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/lh/9lh0/9lh0.dat
• saxs_fit /app/data/saxs_computation/lh/9lh0/9lh0.fit
• saxs_log /app/data/saxs_computation/lh/9lh0/9lh0.log
• saxs_plot /app/data/visualization/saxs_computation/lh/9lh0/9lh0_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/lh/9lh0/9lh0.fit
pddf	/app/data/pr_computation/lh/9lh0/9lh0.pr.out
profile	/app/data/saxs_computation/lh/9lh0/9lh0.dat