9mxc

Cryo-EM Structure of Human Enterovirus D68 USA/IL/14-18952 in Complex with Fc-MFSD6(L3)

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

viral protein 1

OrganismNot specified

UniProt A0A1I9KHM1

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 300 其他Polymer 60 viral protein 2 × 60 (A0A1B0T636) viral protein 3 × 60 (A0A097BW17) viral protein 4 × 60 (Q68T42) Major facilitator superfamily domain-containing protein 6 × 60 (Q6ZSS7) ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; × 60 SODIUM ION × 180 water × 300 Consistent with protein count
2 Other combination Heteromer Protein 5 其他Polymer 1 viral protein 2 × 1 (A0A1B0T636) viral protein 3 × 1 (A0A097BW17) viral protein 4 × 1 (Q68T42) Major facilitator superfamily domain-containing protein 6 × 1 (Q6ZSS7) ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; × 1 SODIUM ION × 3 water × 5 Consistent with protein count
3 Other combination Heteromer Protein 25 其他Polymer 5 viral protein 2 × 5 (A0A1B0T636) viral protein 3 × 5 (A0A097BW17) viral protein 4 × 5 (Q68T42) Major facilitator superfamily domain-containing protein 6 × 5 (Q6ZSS7) ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; × 5 SODIUM ION × 15 water × 25 Consistent with protein count
4 Other combination Heteromer Protein 30 其他Polymer 6 viral protein 2 × 6 (A0A1B0T636) viral protein 3 × 6 (A0A097BW17) viral protein 4 × 6 (Q68T42) Major facilitator superfamily domain-containing protein 6 × 6 (Q6ZSS7) ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; × 6 SODIUM ION × 18 water × 30 Consistent with protein count
5 Other combination Heteromer Protein 5 其他Polymer 1 viral protein 2 × 1 (A0A1B0T636) viral protein 3 × 1 (A0A097BW17) viral protein 4 × 1 (Q68T42) Major facilitator superfamily domain-containing protein 6 × 1 (Q6ZSS7) ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; × 1 SODIUM ION × 3 water × 5 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A1I9KHM1_HED68
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–297; UniProt 565–861

viral protein 2

OrganismNot specified

UniProt A0A1B0T636

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 300 其他Polymer 60 viral protein 1 × 60 (A0A1I9KHM1) viral protein 3 × 60 (A0A097BW17) viral protein 4 × 60 (Q68T42) Major facilitator superfamily domain-containing protein 6 × 60 (Q6ZSS7) ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; × 60 SODIUM ION × 180 water × 300 Consistent with protein count
2 Other combination Heteromer Protein 5 其他Polymer 1 viral protein 1 × 1 (A0A1I9KHM1) viral protein 3 × 1 (A0A097BW17) viral protein 4 × 1 (Q68T42) Major facilitator superfamily domain-containing protein 6 × 1 (Q6ZSS7) ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; × 1 SODIUM ION × 3 water × 5 Consistent with protein count
3 Other combination Heteromer Protein 25 其他Polymer 5 viral protein 1 × 5 (A0A1I9KHM1) viral protein 3 × 5 (A0A097BW17) viral protein 4 × 5 (Q68T42) Major facilitator superfamily domain-containing protein 6 × 5 (Q6ZSS7) ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; × 5 SODIUM ION × 15 water × 25 Consistent with protein count
4 Other combination Heteromer Protein 30 其他Polymer 6 viral protein 1 × 6 (A0A1I9KHM1) viral protein 3 × 6 (A0A097BW17) viral protein 4 × 6 (Q68T42) Major facilitator superfamily domain-containing protein 6 × 6 (Q6ZSS7) ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; × 6 SODIUM ION × 18 water × 30 Consistent with protein count
5 Other combination Heteromer Protein 5 其他Polymer 1 viral protein 1 × 1 (A0A1I9KHM1) viral protein 3 × 1 (A0A097BW17) viral protein 4 × 1 (Q68T42) Major facilitator superfamily domain-containing protein 6 × 1 (Q6ZSS7) ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; × 1 SODIUM ION × 3 water × 5 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A1B0T636_HED68
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–237; UniProt 81–317

viral protein 3

OrganismNot specified

UniProt A0A097BW17

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 300 其他Polymer 60 viral protein 1 × 60 (A0A1I9KHM1) viral protein 2 × 60 (A0A1B0T636) viral protein 4 × 60 (Q68T42) Major facilitator superfamily domain-containing protein 6 × 60 (Q6ZSS7) ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; × 60 SODIUM ION × 180 water × 300 Consistent with protein count
2 Other combination Heteromer Protein 5 其他Polymer 1 viral protein 1 × 1 (A0A1I9KHM1) viral protein 2 × 1 (A0A1B0T636) viral protein 4 × 1 (Q68T42) Major facilitator superfamily domain-containing protein 6 × 1 (Q6ZSS7) ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; × 1 SODIUM ION × 3 water × 5 Consistent with protein count
3 Other combination Heteromer Protein 25 其他Polymer 5 viral protein 1 × 5 (A0A1I9KHM1) viral protein 2 × 5 (A0A1B0T636) viral protein 4 × 5 (Q68T42) Major facilitator superfamily domain-containing protein 6 × 5 (Q6ZSS7) ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; × 5 SODIUM ION × 15 water × 25 Consistent with protein count
4 Other combination Heteromer Protein 30 其他Polymer 6 viral protein 1 × 6 (A0A1I9KHM1) viral protein 2 × 6 (A0A1B0T636) viral protein 4 × 6 (Q68T42) Major facilitator superfamily domain-containing protein 6 × 6 (Q6ZSS7) ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; × 6 SODIUM ION × 18 water × 30 Consistent with protein count
5 Other combination Heteromer Protein 5 其他Polymer 1 viral protein 1 × 1 (A0A1I9KHM1) viral protein 2 × 1 (A0A1B0T636) viral protein 4 × 1 (Q68T42) Major facilitator superfamily domain-containing protein 6 × 1 (Q6ZSS7) ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; × 1 SODIUM ION × 3 water × 5 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A097BW17_HED68
Isoform —
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–247; UniProt 318–564

viral protein 4

OrganismNot specified

UniProt Q68T42

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 300 其他Polymer 60 viral protein 1 × 60 (A0A1I9KHM1) viral protein 2 × 60 (A0A1B0T636) viral protein 3 × 60 (A0A097BW17) Major facilitator superfamily domain-containing protein 6 × 60 (Q6ZSS7) ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; × 60 SODIUM ION × 180 water × 300 Consistent with protein count
2 Other combination Heteromer Protein 5 其他Polymer 1 viral protein 1 × 1 (A0A1I9KHM1) viral protein 2 × 1 (A0A1B0T636) viral protein 3 × 1 (A0A097BW17) Major facilitator superfamily domain-containing protein 6 × 1 (Q6ZSS7) ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; × 1 SODIUM ION × 3 water × 5 Consistent with protein count
3 Other combination Heteromer Protein 25 其他Polymer 5 viral protein 1 × 5 (A0A1I9KHM1) viral protein 2 × 5 (A0A1B0T636) viral protein 3 × 5 (A0A097BW17) Major facilitator superfamily domain-containing protein 6 × 5 (Q6ZSS7) ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; × 5 SODIUM ION × 15 water × 25 Consistent with protein count
4 Other combination Heteromer Protein 30 其他Polymer 6 viral protein 1 × 6 (A0A1I9KHM1) viral protein 2 × 6 (A0A1B0T636) viral protein 3 × 6 (A0A097BW17) Major facilitator superfamily domain-containing protein 6 × 6 (Q6ZSS7) ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; × 6 SODIUM ION × 18 water × 30 Consistent with protein count
5 Other combination Heteromer Protein 5 其他Polymer 1 viral protein 1 × 1 (A0A1I9KHM1) viral protein 2 × 1 (A0A1B0T636) viral protein 3 × 1 (A0A097BW17) Major facilitator superfamily domain-containing protein 6 × 1 (Q6ZSS7) ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; × 1 SODIUM ION × 3 water × 5 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name POLG_HED68
Isoform —
PDB entities 4
Chains and sequence ranges Author chain D; PDBConstruct 1–30; UniProt 29–58

Major facilitator superfamily domain-containing protein 6

Homo sapiens

UniProt Q6ZSS7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Other combination Heteromer Protein 300 其他Polymer 60 viral protein 1 × 60 (A0A1I9KHM1) viral protein 2 × 60 (A0A1B0T636) viral protein 3 × 60 (A0A097BW17) viral protein 4 × 60 (Q68T42) ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; × 60 SODIUM ION × 180 water × 300 Consistent with protein count
2 Other combination Heteromer Protein 5 其他Polymer 1 viral protein 1 × 1 (A0A1I9KHM1) viral protein 2 × 1 (A0A1B0T636) viral protein 3 × 1 (A0A097BW17) viral protein 4 × 1 (Q68T42) ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; × 1 SODIUM ION × 3 water × 5 Consistent with protein count
3 Other combination Heteromer Protein 25 其他Polymer 5 viral protein 1 × 5 (A0A1I9KHM1) viral protein 2 × 5 (A0A1B0T636) viral protein 3 × 5 (A0A097BW17) viral protein 4 × 5 (Q68T42) ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; × 5 SODIUM ION × 15 water × 25 Consistent with protein count
4 Other combination Heteromer Protein 30 其他Polymer 6 viral protein 1 × 6 (A0A1I9KHM1) viral protein 2 × 6 (A0A1B0T636) viral protein 3 × 6 (A0A097BW17) viral protein 4 × 6 (Q68T42) ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; × 6 SODIUM ION × 18 water × 30 Consistent with protein count
5 Other combination Heteromer Protein 5 其他Polymer 1 viral protein 1 × 1 (A0A1I9KHM1) viral protein 2 × 1 (A0A1B0T636) viral protein 3 × 1 (A0A097BW17) viral protein 4 × 1 (Q68T42) ;alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; × 1 SODIUM ION × 3 water × 5 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name MFSD6_HUMAN
Isoform —
PDB entities 5
Chains and sequence ranges Author chain E; PDBConstruct 1–9; UniProt 200–208

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id9mxc
Deposition date deposition_date2025-01-18
Structure title titleCryo-EM Structure of Human Enterovirus D68 USA/IL/14-18952 in Complex with Fc-MFSD6(L3)
Keywords keywordsVirus, Glycan, MFSD6, Receptor; VIRUS
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9mxc__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9mxc__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 1011 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9mxc__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)0.00 Å
Rg (electron density)136.90 Å
Total Rg137.00 Å
Atom count768240
Residues49200
Excluded volume6903000 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9mxc__assembly_1__model_1 300-meric (300) Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 9mxc__assembly_2__model_1 pentameric (5) Excluded — —
Exclusion reason: Auxiliary symmetry representation; not a complete or representative biological assembly.
3 1 9mxc__assembly_3__model_1 25-meric (25) Excluded — —
Exclusion reason: Auxiliary symmetry representation; not a complete or representative biological assembly.
4 1 9mxc__assembly_4__model_1 30-meric (30) Excluded — —
Exclusion reason: Auxiliary symmetry representation; not a complete or representative biological assembly.
5 1 9mxc__assembly_5__model_1 pentameric (5) Excluded — —
Exclusion reason: Auxiliary symmetry representation; not a complete or representative biological assembly.
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (8)

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7. Citations (1)