9pn0

Structure of HTTQ23-HAP40 complex bound to macrocycles HHD3, HD4 and HL2

Method: ELECTRON MICROSCOPY Dmax: 150.2 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

Huntingtin

Homo sapiens

UniProt P42858

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 5 PDB declaration: pentameric(5) Consistent with protein copy count Chain A; UniProt 1–3142 Not recorded HD4 × 1 HHD3 × 1 HL2 × 1 40-kDa huntingtin-associated protein × 1 (P23610) ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 2.30 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

30 other PDB entries and 38 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name HD_HUMAN
Isoform
PDB entities 4
Chains and sequence ranges Author chain A; PDBConstruct 1–3144; UniProt 1–3142

40-kDa huntingtin-associated protein

Homo sapiens

UniProt P23610

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 5 PDB declaration: pentameric(5) Consistent with protein copy count Chain B; UniProt 1–371 Not recorded HD4 × 1 HHD3 × 1 HL2 × 1 Huntingtin × 1 (P42858) ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 2.30 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

9 other PDB entries and 9 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name HAP40_HUMAN
Isoform
PDB entities 5
Chains and sequence ranges Author chain B; PDBConstruct 19–389; UniProt 1–371

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 9pn0

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 9pn0
Download Download

2. Structure Basics 2. Structure Basics

Entry ID entry_id9pn0
Deposition date deposition_date2025-07-18
Structure title titleStructure of HTTQ23-HAP40 complex bound to macrocycles HHD3, HD4 and HL2
Keywords keywordsHuntingtin, Macrocycles, Polyglutamine expansion, PEPTIDE BINDING PROTEIN; PEPTIDE BINDING PROTEIN
Experimental Method methodELECTRON MICROSCOPY

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier46.56
Radius of gyration Rg (electron density) rg_electron46.12
Forward intensity I(0) i01143810000.00
Molecular weight molecular_weight290340.0 kDa
Excluded volume excluded_volume367680 ų
Envelope volume envelope_volume501680 ų
Hydration-shell volume shell_volume88546 ų
Envelope diameter envelope_diameter153.1
Shell Rg shell_rg52.62
Envelope Rg envelope_rg45.18
Shape Rg shape_rg46.13
Total Rg total_rg46.34
Total atoms total_atoms41230
Residues n_residues2593
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax150.2
Rg (real space) rg_real46.40
Rg uncertainty (real space) rg_real_error1.00
I(0) (real space) i0_real1.1440e+09
I(0) uncertainty (real space) i0_real_error2.0440e+07
Rg (reciprocal space) rg_reciprocal46.56
I(0) (reciprocal space) i0_reciprocal1144000000.0000
Solution quality estimate total_estimate0.6857
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary57.4
Skewness Skewness skewness0.223
Kurtosis Kurtosis kurtosis-0.486
Angular range angular_range— – 0.1700 −1
Current regularization parameter α current_alpha0.0002
Highest regularization parameter α highest_alpha125500000.0000
Real-space data points n_real_points35
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.905; Stabil: 1.000; Sysdev: 0.115; Positv: 1.000; Valcen: 0.984; Smooth: 0.868

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (5)

8. Citations (1)

9. Files and Curves (10)