Anti-NANP Fab with G112T light chain mutation

entry_id	9pz6
deposition_date	2025-08-08
last_revision	2025-12-03
title	Anti-NANP Fab with G112T light chain mutation
keywords	NANP, antibody, Fab, lambda, IMMUNE SYSTEM; IMMUNE SYSTEM
method	X-RAY DIFFRACTION

rg_guinier	25.18 Å
rg_electron	24.14 Å
i0	38628100.00
molecular_weight	47637.0 kDa
excluded_volume	59373 ų
envelope_volume	72287 ų
shell_volume	25061 ų
envelope_diameter	83.7 Å
shell_rg	31.21 Å
envelope_rg	23.94 Å
shape_rg	24.12 Å
total_rg	25.00 Å
total_atoms	3390
n_residues	447
n_harmonics	20
q_range	— – 0.5000 Å−1
n_points	101
shell_type	directional
solvent_density	0.3340 e/ų
contrast_shell	0.0300 e/ų
crysol_version	4.1.3

dmax	80.5 Å
rg_real	25.15 Å
rg_real_error	0.47 Å
i0_real	3.8630e+07
i0_real_error	5.2780e+05
rg_reciprocal	25.16 Å
i0_reciprocal	38630000.0000
total_estimate	0.9060
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	2
r_peak_primary	28.1 Å
skewness	0.270
kurtosis	-0.491
angular_range	— – 0.3150 Å−1
current_alpha	0.0000
highest_alpha	6325000.0000
n_real_points	64
gnom_version	4.1.3
quality_criteria	AN1: 0.000; Oscil: 0.936; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.982; Smooth: 0.984

Unit Cell

length_a	46.974 Å
length_b	71.761 Å
length_c	137.364 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	4

Symmetry

space_group	P 21 21 21
int_tables_number	19
crystal_system	orthorhombic

Refinement

resolution	1.700 Å
resolution_low	39.300 Å
r_factor	0.1988
r_work	0.1971
r_free	0.2307

Diffraction

temperature

100.0 K

Files (7)

• pr_distribution /app/data/pr_computation/pz/9pz6/pr_distribution.json
• pr_output /app/data/pr_computation/pz/9pz6/9pz6.pr.out
• pr_plot /app/data/visualization/pr_computation/pz/9pz6/9pz6_pr_distribution.png
• saxs_curve_dat /app/data/saxs_computation/pz/9pz6/9pz6.dat
• saxs_fit /app/data/saxs_computation/pz/9pz6/9pz6.fit
• saxs_log /app/data/saxs_computation/pz/9pz6/9pz6.log
• saxs_plot /app/data/visualization/saxs_computation/pz/9pz6/9pz6_saxs_profile.png

Curves (3)

fit	/app/data/saxs_computation/pz/9pz6/9pz6.fit
pddf	/app/data/pr_computation/pz/9pz6/9pz6.pr.out
profile	/app/data/saxs_computation/pz/9pz6/9pz6.dat