9q6d
CryoEM structure of decameric COMMD-like protein MBK5214510 from Flavobacteriaceae bacterium
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9q6d |
| deposition_date | 2025-08-22 |
| title | CryoEM structure of decameric COMMD-like protein MBK5214510 from Flavobacteriaceae bacterium |
| keywords | COMMD, homooligomer, UNKNOWN FUNCTION; UNKNOWN FUNCTION |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 47.88 Å |
| rg_electron | 46.68 Å |
| i0 | 913003000.00 |
| molecular_weight | 255210.0 kDa |
| excluded_volume | 322040 ų |
| envelope_volume | 531310 ų |
| shell_volume | 92471 ų |
| envelope_diameter | 134.9 Å |
| shell_rg | 55.47 Å |
| envelope_rg | 43.52 Å |
| shape_rg | 46.65 Å |
| total_rg | 47.15 Å |
| total_atoms | 36210 |
| n_residues | 2200 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 138.8 Å |
| rg_real | 47.32 Å |
| rg_real_error | 0.72 Å |
| i0_real | 9.1300e+08 |
| i0_real_error | 1.4750e+07 |
| rg_reciprocal | 47.87 Å |
| i0_reciprocal | 913600000.0000 |
| total_estimate | 0.8843 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 1 |
| r_peak_primary | 71.5 Å |
| skewness | -0.186 |
| kurtosis | -0.600 |
| angular_range | — – 0.1650 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 107400000.0000 |
| n_real_points | 34 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.880; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.947; Smooth: 0.903 |