SAXSdb — 9qe1

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1. Structure Basics

entry_id	9qe1
deposition_date	2025-03-07
title	Neobacillus vireti Wadjet-II JetABC monomer
keywords	SMC complexes, Wadjet, JetABCD, DNA loop extrusion, DNA BINDING PROTEIN; DNA BINDING PROTEIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	71.70 Å
rg_electron	72.40 Å
i0	2614510000.00
molecular_weight	425370.0 kDa
excluded_volume	530530 Å³
envelope_volume	881070 Å³
shell_volume	114230 Å³
envelope_diameter	294.4 Å
shell_rg	59.94 Å
envelope_rg	73.18 Å
shape_rg	72.37 Å
total_rg	72.25 Å
total_atoms	59385
n_residues	3590
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	213.4 Å
rg_real	69.42 Å
rg_real_error	1.10 Å
i0_real	2.5640e+09
i0_real_error	5.3340e+07
rg_reciprocal	69.39 Å
i0_reciprocal	2600000000.0000
total_estimate	0.8590
solution_quality	GOOD a GOOD solution
n_peaks	1
r_peak_primary	67.9 Å
skewness	0.452
kurtosis	-0.405
angular_range	— – 0.1100 Å⁻¹
current_alpha	0.6739
highest_alpha	118300000.0000
n_real_points	23
gnom_version	4.1.3
quality_criteria	AN1: 0.001; Oscil: 0.962; Stabil: 0.987; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.076

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4. Crystallography & Experiment

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5. Entities & Polymer Info (4)

Entity 1 polymer

description	JetC
formula_weight	161659.0 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	A,B
atom_count	59385

MMTEAKWVMNRAGLLNFWYYDDEIFPFSDGKLLLRGTNGSGKSVTMQSFLPVLLDGKKSPDRLDPFGSKARRMEDYLLGEKEVVDRDERTGYLFIEYKKAGVERYITTGIGMQAKRHKGIKSWYFVITDNRRIGYDFELAHSQLGDRVPFSAKELENRIGEGGYVVHTQREYMELVNKYIFGFQSNEAYEDLIKLLIQLRSPKLSKDFKPTVIYEILESALPPLTDDELRHLSDTIESMDQTQQQLEQLEREFASSSRLVNQYHSYNQYILAERAGKWQDALKRYTVAEEHVKGLTAQDEELTQEIKQEEEQKQQFAQQQEIALEEKKRLERHEVWNLEEDKRKKIENTKSLSSEINSLQKKWDHKNSQYNRLWQEREQSQNQIRQHESGMEDLLGELQFDAEEAAFSEHEVNVHDFERHQEEEFDFSIWIGEIGSHEQLLANLNQLADEENRLSEEHNRLQRQSSEKKKEVDAIRKNLDHLADWFTEEKQRLEHQVFTWIEQHPKLIFSNERRQEIARSIEGLYEENRYEQVREKLLAVVNDYITDISTKKKLMETKIEDKKHELEAARAELHHWKTLKMPNPDRAKDTEAFRLQLLEDGQAFIPFYAAVEFQDDVTEEQKERIESALKQTGILDSLITENALAPTHDRVIRPEPQLLGYTLADYLRPDLEADSLISNKLVDEILRSISLEQEGAGFHVDVDGSYSLGCLVGHAPNEGPSKYIGRSSRKRYQQEKIKECQETIEQLQLELEELKVQLSQYEENLLQAAQWKQTMPTDQELNDLNVQIEKTGHQLEEQKKVLFQLDEQWKQVHGHLQVIKIQLHQEGRQLNLSLTKEVLGQALISAKNYRDQLYSFKDLFQKCLFARKRIEDLTHRLFEMETELDDLKGDQNVKESQLRKEKAEIESIEQQLKLKGIEEVRLRIQQVQQELREATEGINHLLETIPQKKAKQETCQNELAAAKTSAEFWSNMADEWEQMVRADIARGFVEVVEMDPVKIVKQLESILGKYDRSKLNEQLTKTFINEQIFLTEYRMFEYPEETERPEWFSKEWGEYYEPFMNEWNQLQSRRLILMEYKGQRVSPYFVFTSLEKELEDQKGWLDEQDRQLYEDIIVNTVGVILRNRIKRAEKWVSEMDKIMESRDNSSGLTFSIAWKPLTAESEQELDTKDLVKLLQRNSKFLNEDDLNRITKHFQSRIGKAKELIQLRNEGSTLHQVLKEVLDYRKWFTFVLSFKRVNEPKRELTNNAFFKFSGGEKAMAMYIPLFTAAYSRYKEAGEMAPYIISLDEAFAGVDENNIRDMFEVVEQLGFNYIMNSQALWGDYDTISSLSICELVRPKNADFVTVIRYQWDGKQRTFVVDDEHVEELVTHDG

Source

organism	Neobacillus vireti LMG 21834
ncbi_taxonomy_id	1131730
host_organism	Escherichia coli BL21

Entity 2 polymer

description	JetB
formula_weight	46569.7 kDa
src_method	man
entity_count	1

Polymer

type	polypeptide(L)
strand_id	D

MIMEQTQLFDEKAIQGMDILFHHYWILRAEQPEWYQLIREREKVLRRYLDEKFGLRLIVHQHFIKLEKIPVEPEGWMGIQDFQEPMDYAIFCCALAFLEGKAVDEQFLLSELCQEIQADYPGDFPLDWTLYTHRKSLIRAVKVLMEFQLIRTIDGDIGRFDQNEEQEVLYEASTYSRYFMRTYPDDFSSYQHWSELLKEDWKLNQEDERRKRVYRKLFFSPGLHRLDQQDPDFLYIRNYRNRLAEDIEKHSEYKLHVYKNTAFLSIAEPRQYQQVFPNSKASTDIILQLSKYIHGEPERFKANENGEILMTEGEFEQVVDDLRQQFGTGWAKYFRDMSTKGIRTELLRAMKDWMMAEVDSETSLIRIKSLTGVMTGEYPSDFQTGGTEG

Source

organism	Neobacillus vireti LMG 21834
ncbi_taxonomy_id	1131730
host_organism	Escherichia coli BL21

Entity 3 polymer

description	JetA
formula_weight	59719.6 kDa
src_method	man
entity_count	2

Polymer

type	polypeptide(L)
strand_id	E,J

GPAAMDSTMKKIIEASYLTADSAAHYRTILRYFYHQHERMRDFIAPEELLEHMRSIPAFADFQEDQLHQQLAQLVKWNNLIARQDMTNAKTIEEYKKKRFRYQCTPYTVEIERMIVQLEKLGDTFQGSLERSQFDRLFQAITSLQNELENDLNKSAEEYMRIWEDVFRYFQTIRTSTADYIAYINSEQTDQRMQTEAFLVYKNQFTTYLRDFIVSLQKTSLQIQHSLSELTLERLQHFFQKLIEHRGAIPRLEDVSSSTNDWLTEYEEYWFSLRQWFLGSAVQQSELDILQWQTNEMIRRMTRYVQRIGERQQHFRSRKKDYLQLSKWFVECRDSEEAHKLSAVVFGSMTIQHLQLEEATTENLHVDTWDEAPTELTIKPRTVRYREKTKPGSFNSNEQKKKEQRELYLKEREQEKKLIEKYMTQGKITLSALSTVEPFIRKVLLSWIGKSMAAKNRMVKTDYGLHVKVMLDYEKTITLQAEDGNLLMPDATFLFEETRG

Source

organism	Neobacillus vireti LMG 21834
ncbi_taxonomy_id	1131730
host_organism	Escherichia coli BL21

Entity 4 non-polymer

description	ADENOSINE-5'-DIPHOSPHATE
formula_weight	427.2 kDa
src_method	syn
entity_count	2

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6. Citations (1)

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length_a	1.000 Å
length_b	1.000 Å
length_c	1.000 Å
angle_alpha	90.00 °
angle_beta	90.00 °
angle_gamma	90.00 °
z_pdb	—

space_group	P 1
int_tables_number	1
crystal_system	—

resolution	3.50 Å
resolution_method	—
num_particles	47279

fit	/app/data/saxs_computation/qe/9qe1/9qe1.fit
pddf	/app/data/pr_computation/qe/9qe1/9qe1.pr.out
profile	/app/data/saxs_computation/qe/9qe1/9qe1.dat

Neobacillus vireti Wadjet-II JetABC monomer

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

Unit Cell

Symmetry

EM 3D

5. Entities & Polymer Info (4)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 polymer

Polymer

Source

Entity 4 non-polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)