9qfm
LY12 Main Morphology
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9qfm |
| deposition_date | 2025-03-12 |
| title | LY12 Main Morphology |
| keywords | amyloid fibril, seed storage protein, in vitro, PROTEIN FIBRIL; PROTEIN FIBRIL |
| method | ELECTRON MICROSCOPY |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 28.51 Å |
| rg_electron | 28.59 Å |
| i0 | 19458100.00 |
| molecular_weight | 44335.0 kDa |
| excluded_volume | 60237 ų |
| envelope_volume | 72011 ų |
| shell_volume | 22846 ų |
| envelope_diameter | 95.3 Å |
| shell_rg | 33.56 Å |
| envelope_rg | 28.88 Å |
| shape_rg | 28.57 Å |
| total_rg | 29.38 Å |
| total_atoms | 3132 |
| n_residues | 408 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 94.4 Å |
| rg_real | 28.93 Å |
| rg_real_error | 1.05 Å |
| i0_real | 1.9460e+07 |
| i0_real_error | 3.1590e+05 |
| rg_reciprocal | 28.80 Å |
| i0_reciprocal | 19460000.0000 |
| total_estimate | 0.8073 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 3 |
| r_peak_primary | 25.3 Å |
| skewness | 0.525 |
| kurtosis | -0.559 |
| angular_range | — – 0.2800 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 2404000.0000 |
| n_real_points | 57 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.680; Stabil: 0.995; Sysdev: 1.000; Positv: 1.000; Valcen: 0.605; Smooth: 0.862 |