SAXSdb — 9r6c

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1. Structure Basics

entry_id	9r6c
deposition_date	2025-05-11
title	CPS secretion pathway Wza-Wzc (Conf 5)
keywords	CPS transporter, TRANSPORT PROTEIN; TRANSPORT PROTEIN
method	ELECTRON MICROSCOPY

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Download Data

SAXS curve (.dat) P(r) distribution (.pr.out) Structure (CIF)

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2. SAXS Parameters (CRYSOL)

rg_guinier	— Å
rg_electron	120.40 Å
i0	20722600000.00
molecular_weight	1227100.0 kDa
excluded_volume	1536600 Å³
envelope_volume	3036600 Å³
shell_volume	222020 Å³
envelope_diameter	382.2 Å
shell_rg	90.55 Å
envelope_rg	115.40 Å
shape_rg	120.30 Å
total_rg	120.40 Å
total_atoms	172976
n_residues	11072
n_harmonics	20
q_range	— – 0.5000 Å⁻¹
n_points	101
shell_type	directional
solvent_density	0.3340 e/Å³
contrast_shell	0.0300 e/Å³
crysol_version	4.1.3

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3. P(r) Analysis (GNOM)

dmax	324.7 Å
rg_real	114.60 Å
rg_real_error	1.54 Å
i0_real	1.9990e+10
i0_real_error	4.5150e+08
rg_reciprocal	104.20 Å
i0_reciprocal	19670000000.0000
total_estimate	0.9004
solution_quality	EXCELLENT a EXCELLENT solution
n_peaks	1
r_peak_primary	99.9 Å
skewness	0.391
kurtosis	-0.833
angular_range	— – 0.0650 Å⁻¹
current_alpha	0.8661
highest_alpha	753400000.0000
n_real_points	14
gnom_version	4.1.3
quality_criteria	AN1: 0.001; Oscil: 0.946; Stabil: 0.963; Sysdev: 1.000; Positv: 1.000; Valcen: 0.953; Smooth: 0.024

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4. Crystallography & Experiment

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5. Entities & Polymer Info (3)

Entity 1 polymer

description	Putative polysaccharide export protein Wza
formula_weight	43873.8 kDa
src_method	man
entity_count	16

Polymer

type	polypeptide(L)
strand_id	A,B,C,D,E,F,G,H,a,b,c,d,e,f,g,h
atom_count	172976

MMKSKMKLMPLLVSVTLISGCTVLPGSNMSTMGKDVIKQQDADFDLDKMVNVYPLTPRLIDQLRPRPNVARPNMTLESEIANYQYRVGPGDVLNVTVWDHPELTTPAGQYRSSSDTGNWVQPDGTMFYPYIGKVHVVGKTLAEIRSDITGRLATYIADPQVDVNIAAFRSQKAYISGQVNKSGQQAITNVPLTILDAINAAGGLTDTADWRNVVLTHNGREERISLQALMQNGDLNQNRLLYPGDILYVPRNDDLKVFVMGEVKKQSTLKMDFSGMTLTEALGNAEGIDMTTSNASGIFVIRPLKGEGGRNGKIANIYQLDMSDATSLVMATEFRLQPYDVVYVTTAPVSRWNRLINQLLPTISGVRYMTDTASDIHNWENLYFQSWSHPQFEK

Source

organism	Escherichia coli K-12
ncbi_taxonomy_id	83333
host_organism	Escherichia coli B

Entity 2 polymer

description	Tyrosine-protein kinase wzc
formula_weight	81557.1 kDa
ec_number	2.7.10.-
src_method	man
entity_count	8

Polymer

type	polypeptide(L)
strand_id	I,J,K,L,M,N,O,P

MTEKVKQHAAPVTGSDEIDIGRLVGTVIEARWWVIGITTVFALCAVVYTFFATPIYSADALVQIEQNSGNSLVQDIGSALANKPPASDAEIQLIRSRLVLGKTVDDLDLDIAVSKNTFPIFGAGWDRLMGRQNETVKVTTFNRPKEMADQVFTLNVLDNKNYTLSSDGGFSARGQAGQMLKKEGVTLMVEAIHASPGSEFTVTKYSTLGMINQLQNSLTVTENGKDAGVLSLTYTGEDREQIRDILNSIARNYQEQNIERKSAEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKVHPAYRTLLEKRQALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKEQELKITEASTVGDVRIVDPAITQPGVLKPKKGLIILGAIILGLMLSIVGVLLRSLFNRGIESPQVLEEHGISVYASIPLSEWQKARDSVKTIKGIKRYKQSQLLAVGNPTDLAIEAIRSLRTSLHFAMMQAQNNVLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTAAKPTSIAKFDLIPRGQVPPNPSELLMSERFAELVNWASKNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRASAYQDYGYYEYEYKSDAKSSGENLYFQGWSHPQFEK

Source

organism	Escherichia coli K-12
ncbi_taxonomy_id	83333
host_organism	Escherichia coli B

Entity 3 non-polymer

description	ADENOSINE-5'-DIPHOSPHATE
formula_weight	427.2 kDa
src_method	syn
entity_count	8

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6. Citations (1)

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resolution	6.70 Å
resolution_method	—
num_particles	59128

fit	/app/data/saxs_computation/r6/9r6c/9r6c.fit
pddf	/app/data/pr_computation/r6/9r6c/9r6c.pr.out
profile	/app/data/saxs_computation/r6/9r6c/9r6c.dat

CPS secretion pathway Wza-Wzc (Conf 5)

SAXS Profile

P(r) Distribution

1. Structure Basics

Download Data

2. SAXS Parameters (CRYSOL)

3. P(r) Analysis (GNOM)

4. Crystallography & Experiment

EM 3D

5. Entities & Polymer Info (3)

Entity 1 polymer

Polymer

Source

Entity 2 polymer

Polymer

Source

Entity 3 non-polymer

6. Citations (1)

7. Files & Curves (10)

Files (7)

Curves (3)