9rca
Solution NMR structure of the lipoyl domain of the E2 subunit in the human alpha-ketoglutarate dehydrogenase complex
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9rca |
| deposition_date | 2025-05-27 |
| last_revision | 2026-06-10 |
| title | Solution NMR structure of the lipoyl domain of the E2 subunit in the human alpha-ketoglutarate dehydrogenase complex |
| keywords | ;Lipoyl domain; alpha-ketoglutarate dehydrogenase complex; 2-oxoglutarate dehydrogenase complex; dihydrolipoamide succinyltransferase; E2 subunit, TRANSFERASE ;; TRANSFERASE |
| method | SOLUTION NMR |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 13.25 Å |
| rg_electron | 12.78 Å |
| i0 | 108937000.00 |
| molecular_weight | 86416.0 kDa |
| excluded_volume | 107820 ų |
| envelope_volume | 15545 ų |
| shell_volume | 10030 ų |
| envelope_diameter | 50.0 Å |
| shell_rg | 18.97 Å |
| envelope_rg | 14.50 Å |
| shape_rg | 12.76 Å |
| total_rg | 13.05 Å |
| total_atoms | 12070 |
| n_residues | 840 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 49.3 Å |
| rg_real | 13.30 Å |
| rg_real_error | 0.42 Å |
| i0_real | 1.0890e+08 |
| i0_real_error | 1.3110e+06 |
| rg_reciprocal | 13.30 Å |
| i0_reciprocal | 108900000.0000 |
| total_estimate | 0.7167 |
| solution_quality | REASONABLE a REASONABLE solution |
| n_peaks | 2 |
| r_peak_primary | 13.7 Å |
| skewness | 0.435 |
| kurtosis | -0.172 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 197000.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.517; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.761; Smooth: 0.000 |