9rxo
Structure of the PDZ2 domain from human PDZK1 (NHERF3) with the C-terminal residues (KSTQF) of human URAT1 transporter (SLC22A12)
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9rxo |
| deposition_date | 2025-07-11 |
| title | Structure of the PDZ2 domain from human PDZK1 (NHERF3) with the C-terminal residues (KSTQF) of human URAT1 transporter (SLC22A12) |
| keywords | Scaffold protein, PDZ domain, urate transporter, solute carrier, protein-protein interaction, NHERFs, PROTEIN BINDING; PROTEIN BINDING |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 19.44 Å |
| rg_electron | 18.56 Å |
| i0 | 7690920.00 |
| molecular_weight | 20013.0 kDa |
| excluded_volume | 25039 ų |
| envelope_volume | 31713 ų |
| shell_volume | 14979 ų |
| envelope_diameter | 74.9 Å |
| shell_rg | 23.88 Å |
| envelope_rg | 19.40 Å |
| shape_rg | 18.58 Å |
| total_rg | 19.43 Å |
| total_atoms | 2813 |
| n_residues | 182 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 74.3 Å |
| rg_real | 19.52 Å |
| rg_real_error | 0.74 Å |
| i0_real | 7.6910e+06 |
| i0_real_error | 1.1040e+05 |
| rg_reciprocal | 19.51 Å |
| i0_reciprocal | 7691000.0000 |
| total_estimate | 0.7902 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 20.9 Å |
| skewness | 0.527 |
| kurtosis | 0.128 |
| angular_range | — – 0.4100 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 2209000.0000 |
| n_real_points | 72 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.530; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.680; Smooth: 0.998 |