9rxr
Structure of the PDZ1 domain from human PDZK1 (NHERF3) with the C-terminal residues (VLKSTQF) of human URAT1 transporter (SLC22A12)
SAXS Profile
P(r) Distribution
1. Structure Basics
| entry_id | 9rxr |
| deposition_date | 2025-07-11 |
| title | Structure of the PDZ1 domain from human PDZK1 (NHERF3) with the C-terminal residues (VLKSTQF) of human URAT1 transporter (SLC22A12) |
| keywords | Scaffold protein, PDZ domain, urate transporter, solute carrier, protein-protein interaction, NHERFs, PROTEIN BINDING; PROTEIN BINDING |
| method | X-RAY DIFFRACTION |
Download Data
2. SAXS Parameters (CRYSOL)
| rg_guinier | 14.98 Å |
| rg_electron | 13.63 Å |
| i0 | 3175530.00 |
| molecular_weight | 12234.0 kDa |
| excluded_volume | 15281 ų |
| envelope_volume | 18015 ų |
| shell_volume | 11397 ų |
| envelope_diameter | 47.7 Å |
| shell_rg | 19.16 Å |
| envelope_rg | 14.05 Å |
| shape_rg | 13.59 Å |
| total_rg | 14.95 Å |
| total_atoms | 1731 |
| n_residues | 109 |
| n_harmonics | 20 |
| q_range | — – 0.5000 Å−1 |
| n_points | 101 |
| shell_type | directional |
| solvent_density | 0.3340 e/ų |
| contrast_shell | 0.0300 e/ų |
| crysol_version | 4.1.3 |
3. P(r) Analysis (GNOM)
| dmax | 48.7 Å |
| rg_real | 14.89 Å |
| rg_real_error | 0.23 Å |
| i0_real | 3.1760e+06 |
| i0_real_error | 3.3880e+04 |
| rg_reciprocal | 14.90 Å |
| i0_reciprocal | 3176000.0000 |
| total_estimate | 0.8804 |
| solution_quality | GOOD a GOOD solution |
| n_peaks | 2 |
| r_peak_primary | 18.5 Å |
| skewness | 0.179 |
| kurtosis | -0.267 |
| angular_range | — – 0.5000 Å−1 |
| current_alpha | 0.0000 |
| highest_alpha | 540000.0000 |
| n_real_points | 80 |
| gnom_version | 4.1.3 |
| quality_criteria | AN1: 0.000; Oscil: 0.825; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.998; Smooth: 0.969 |