9uxa

local ARP-NCP structure of the ncBAF-nucleosome complex in the apo state

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Histone H3

Xenopus laevis

UniProt A0A310TTQ1

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 12 DNA 2 Histone H4 × 2 (P62799) Histone H2A × 2 (Q6AZJ8) Histone H2B × 2 (A0A8J0U496) Actin, cytoplasmic 1, N-terminally processed × 1 (P60709) Actin-like protein 6A × 1 (O96019) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 × 1 (P51532) B-cell CLL/lymphoma 7 protein family member B × 1 (Q9BQE9) DNA (167-MER) × 1 DNA (167-MER) × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A310TTQ1_XENLA
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–135; UniProt 2–136 Author chain E; PDBConstruct 1–135; UniProt 2–136

Histone H4

Xenopus laevis

UniProt P62799

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 12 DNA 2 Histone H3 × 2 (A0A310TTQ1) Histone H2A × 2 (Q6AZJ8) Histone H2B × 2 (A0A8J0U496) Actin, cytoplasmic 1, N-terminally processed × 1 (P60709) Actin-like protein 6A × 1 (O96019) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 × 1 (P51532) B-cell CLL/lymphoma 7 protein family member B × 1 (Q9BQE9) DNA (167-MER) × 1 DNA (167-MER) × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name H4_XENLA
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–102; UniProt 2–103 Author chain F; PDBConstruct 1–102; UniProt 2–103

Histone H2A

Xenopus laevis

UniProt Q6AZJ8

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 12 DNA 2 Histone H3 × 2 (A0A310TTQ1) Histone H4 × 2 (P62799) Histone H2B × 2 (A0A8J0U496) Actin, cytoplasmic 1, N-terminally processed × 1 (P60709) Actin-like protein 6A × 1 (O96019) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 × 1 (P51532) B-cell CLL/lymphoma 7 protein family member B × 1 (Q9BQE9) DNA (167-MER) × 1 DNA (167-MER) × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q6AZJ8_XENLA
Isoform —
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 3–131; UniProt 2–130 Author chain G; PDBConstruct 3–131; UniProt 2–130

Histone H2B

Xenopus laevis

UniProt A0A8J0U496

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 12 DNA 2 Histone H3 × 2 (A0A310TTQ1) Histone H4 × 2 (P62799) Histone H2A × 2 (Q6AZJ8) Actin, cytoplasmic 1, N-terminally processed × 1 (P60709) Actin-like protein 6A × 1 (O96019) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 × 1 (P51532) B-cell CLL/lymphoma 7 protein family member B × 1 (Q9BQE9) DNA (167-MER) × 1 DNA (167-MER) × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A8J0U496_XENLA
Isoform —
PDB entities 4
Chains and sequence ranges Author chain D; PDBConstruct 1–122; UniProt 5–126 Author chain H; PDBConstruct 1–122; UniProt 5–126

Actin, cytoplasmic 1, N-terminally processed

Homo sapiens

UniProt P60709

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 12 DNA 2 Histone H3 × 2 (A0A310TTQ1) Histone H4 × 2 (P62799) Histone H2A × 2 (Q6AZJ8) Histone H2B × 2 (A0A8J0U496) Actin-like protein 6A × 1 (O96019) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 × 1 (P51532) B-cell CLL/lymphoma 7 protein family member B × 1 (Q9BQE9) DNA (167-MER) × 1 DNA (167-MER) × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ACTB_HUMAN
Isoform —
PDB entities 5
Chains and sequence ranges Author chain I; PDBConstruct 3–376; UniProt 2–375

Actin-like protein 6A

Homo sapiens

UniProt O96019

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 12 DNA 2 Histone H3 × 2 (A0A310TTQ1) Histone H4 × 2 (P62799) Histone H2A × 2 (Q6AZJ8) Histone H2B × 2 (A0A8J0U496) Actin, cytoplasmic 1, N-terminally processed × 1 (P60709) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 × 1 (P51532) B-cell CLL/lymphoma 7 protein family member B × 1 (Q9BQE9) DNA (167-MER) × 1 DNA (167-MER) × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ACL6A_HUMAN
Isoform —
PDB entities 6
Chains and sequence ranges Author chain J; PDBConstruct 1–422; UniProt 2–423

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4

Homo sapiens

UniProt P51532

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 12 DNA 2 Histone H3 × 2 (A0A310TTQ1) Histone H4 × 2 (P62799) Histone H2A × 2 (Q6AZJ8) Histone H2B × 2 (A0A8J0U496) Actin, cytoplasmic 1, N-terminally processed × 1 (P60709) Actin-like protein 6A × 1 (O96019) B-cell CLL/lymphoma 7 protein family member B × 1 (Q9BQE9) DNA (167-MER) × 1 DNA (167-MER) × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SMCA4_HUMAN
Isoform —
PDB entities 7
Chains and sequence ranges Author chain K; PDBConstruct 3–1648; UniProt 2–1647

B-cell CLL/lymphoma 7 protein family member B

Homo sapiens

UniProt Q9BQE9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Heteromer Protein 12 DNA 2 Histone H3 × 2 (A0A310TTQ1) Histone H4 × 2 (P62799) Histone H2A × 2 (Q6AZJ8) Histone H2B × 2 (A0A8J0U496) Actin, cytoplasmic 1, N-terminally processed × 1 (P60709) Actin-like protein 6A × 1 (O96019) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 × 1 (P51532) DNA (167-MER) × 1 DNA (167-MER) × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name BCL7B_HUMAN
Isoform —
PDB entities 8
Chains and sequence ranges Author chain L; PDBConstruct 3–203; UniProt 2–202

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id9uxa
Deposition date deposition_date2025-05-13
Structure title titlelocal ARP-NCP structure of the ncBAF-nucleosome complex in the apo state
Keywords keywordsChromatin remodeling, SWI/SNF, Epigenetics, GENE REGULATION/DNA, GENE REGULATION-DNA complex; GENE REGULATION/DNA
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9uxa__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9uxa__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9uxa__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)50.17 Å
Rg (electron density)49.95 Å
Total Rg50.15 Å
Atom count18493
Residues1889
Excluded volume310950 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9uxa__assembly_1__model_1 14-meric (14) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (10)

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7. Citations (1)